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Cluster: Rep_461_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_10 Rep_461_c_10_1 73 3444 - GH2
CAZyme Rep_461_c_10 Rep_461_c_10_2 3507 4751 - GH88
pfam Rep_461_c_10 Rep_461_c_10_3 4878 6551 - SusD_RagB | SusD-like_3
TC Rep_461_c_10 Rep_461_c_10_4 6564 9341 - 1.B.14.6.1
pfam Rep_461_c_10 Rep_461_c_10_5 9373 11235 - SusD_RagB | SusD-like_3
TC Rep_461_c_10 Rep_461_c_10_6 11248 14397 - 1.B.14.6.1
TF Rep_461_c_10 Rep_461_c_10_7 14675 17401 - HTH_AraC
STP Rep_461_c_10 Rep_461_c_10_8 17519 18727 - Reg_prop | Reg_prop
CAZyme Rep_461_c_10 Rep_461_c_10_9 18878 21331 + GH95
CAZyme Rep_461_c_10 Rep_461_c_10_10 21373 22482 + GH105
CAZyme Rep_461_c_10 Rep_461_c_10_11 22529 24679 + PL8_3
Gene ID: Rep_461_c_10_1
Type: CAZyme
Location: 73 - 3444 (-)
Gene ID: Rep_461_c_10_2
Type: CAZyme
Location: 3507 - 4751 (-)
Gene ID: Rep_461_c_10_3
Type: pfam
Location: 4878 - 6551 (-)
Gene ID: Rep_461_c_10_4
Type: TC
Location: 6564 - 9341 (-)
Gene ID: Rep_461_c_10_5
Type: pfam
Location: 9373 - 11235 (-)
Gene ID: Rep_461_c_10_6
Type: TC
Location: 11248 - 14397 (-)
Gene ID: Rep_461_c_10_7
Type: TF
Location: 14675 - 17401 (-)
Gene ID: Rep_461_c_10_8
Type: STP
Location: 17519 - 18727 (-)
Gene ID: Rep_461_c_10_9
Type: CAZyme
Location: 18878 - 21331 (+)
Gene ID: Rep_461_c_10_10
Type: CAZyme
Location: 21373 - 22482 (+)
Gene ID: Rep_461_c_10_11
Type: CAZyme
Location: 22529 - 24679 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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