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Cluster: Rep_461_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_9 Rep_461_c_9_86 122736 124925 + GH10
NULL(UNKNOWN) Rep_461_c_9 Rep_461_c_9_87 125002 125190 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_461_c_9 Rep_461_c_9_88 126193 127308 + GH10
CAZyme Rep_461_c_9 Rep_461_c_9_89 127455 129413 + GH5_21
CAZyme Rep_461_c_9 Rep_461_c_9_90 129636 130517 + CE1
CAZyme Rep_461_c_9 Rep_461_c_9_91 130552 133776 + CE6 | GH95
TF Rep_461_c_9 Rep_461_c_9_92 133851 137936 - HTH_AraC
CAZyme Rep_461_c_9 Rep_461_c_9_93 138466 140544 - GH67
pfam Rep_461_c_9 Rep_461_c_9_94 140566 141549 - GFO_IDH_MocA | GFO_IDH_MocA_C | F420_oxidored | GFO_IDH_MocA_C3
CAZyme Rep_461_c_9 Rep_461_c_9_95 141565 142542 - GH43_1
CAZyme Rep_461_c_9 Rep_461_c_9_96 142575 145310 - CBM91 | GH10 | GH43_12
TC Rep_461_c_9 Rep_461_c_9_97 145328 146824 - 2.A.2.3.4
CAZyme Rep_461_c_9 Rep_461_c_9_98 146843 148552 - GH35
CAZyme Rep_461_c_9 Rep_461_c_9_99 148795 151116 - GH10
pfam Rep_461_c_9 Rep_461_c_9_100 151149 152552 - SGBP_B_XBD
pfam Rep_461_c_9 Rep_461_c_9_101 152569 154257 - SusD_RagB | SusD-like_3
TC Rep_461_c_9 Rep_461_c_9_102 154281 157433 - 1.B.14.6.1
TF Rep_461_c_9 Rep_461_c_9_103 157859 161962 + HTH_AraC
NULL(UNKNOWN) Rep_461_c_9 Rep_461_c_9_104 161971 163176 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_461_c_9 Rep_461_c_9_105 163367 164011 - 3.A.1.12.5
Gene ID: Rep_461_c_9_86
Type: CAZyme
Location: 122736 - 124925 (+)
Gene ID: Rep_461_c_9_87
Type:
Location: 125002 - 125190 (+)
Gene ID: Rep_461_c_9_88
Type: CAZyme
Location: 126193 - 127308 (+)
Gene ID: Rep_461_c_9_89
Type: CAZyme
Location: 127455 - 129413 (+)
Gene ID: Rep_461_c_9_90
Type: CAZyme
Location: 129636 - 130517 (+)
Gene ID: Rep_461_c_9_91
Type: CAZyme
Location: 130552 - 133776 (+)
Gene ID: Rep_461_c_9_92
Type: TF
Location: 133851 - 137936 (-)
Gene ID: Rep_461_c_9_93
Type: CAZyme
Location: 138466 - 140544 (-)
Gene ID: Rep_461_c_9_94
Type: pfam
Location: 140566 - 141549 (-)
Gene ID: Rep_461_c_9_95
Type: CAZyme
Location: 141565 - 142542 (-)
Gene ID: Rep_461_c_9_96
Type: CAZyme
Location: 142575 - 145310 (-)
Gene ID: Rep_461_c_9_97
Type: TC
Location: 145328 - 146824 (-)
Gene ID: Rep_461_c_9_98
Type: CAZyme
Location: 146843 - 148552 (-)
Gene ID: Rep_461_c_9_99
Type: CAZyme
Location: 148795 - 151116 (-)
Gene ID: Rep_461_c_9_100
Type: pfam
Location: 151149 - 152552 (-)
Gene ID: Rep_461_c_9_101
Type: pfam
Location: 152569 - 154257 (-)
Gene ID: Rep_461_c_9_102
Type: TC
Location: 154281 - 157433 (-)
Gene ID: Rep_461_c_9_103
Type: TF
Location: 157859 - 161962 (+)
Gene ID: Rep_461_c_9_104
Type:
Location: 161971 - 163176 (-)
Gene ID: Rep_461_c_9_105
Type: TC
Location: 163367 - 164011 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_9_90 vegan > omnivore 2.50015 0.00625
Rep_461_c_9_90 vegetarian > omnivore 1.95458 0.00038
Rep_461_c_9_96 vegan > omnivore 1.47306 0.00625
Rep_461_c_9_96 vegetarian > vegan 1.27442 0.02765
Rep_461_c_9_96 vegetarian > omnivore 2.74748 0.00038
Rep_461_c_9_98 vegetarian > omnivore 1.87484 0.00038
Rep_461_c_9_98 vegan > omnivore 1.46964 0.00625
Rep_461_c_9_99 vegan > omnivore 2.33499 0.00625
Rep_461_c_9_99 vegetarian > omnivore 2.30956 0.00038
Rep_461_c_9_100 vegetarian > omnivore 2.22057 0.00038
Rep_461_c_9_100 vegan > omnivore 2.02437 0.00625
Rep_461_c_9_101 vegetarian > omnivore 2.63445 0.00038
Rep_461_c_9_101 vegan > omnivore 2.37655 0.00625
Rep_461_c_9_103 vegetarian > omnivore 2.14179 0.00038
Rep_461_c_9_103 vegan > omnivore 2.06617 0.00625

🧭 Explore Read Mapping of CGC

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