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Cluster: Rep_461_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_8 Rep_461_c_8_14 13652 14605 + GT2
NULL(UNKNOWN) Rep_461_c_8 Rep_461_c_8_15 14596 15711 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_461_c_8 Rep_461_c_8_16 15718 16503 + GT2
CAZyme Rep_461_c_8 Rep_461_c_8_17 16508 17620 + GT4
pfam Rep_461_c_8 Rep_461_c_8_18 17638 18600 + 3Beta_HSD | Epimerase | RmlD_sub_bind
TC Rep_461_c_8 Rep_461_c_8_19 18638 19591 + 9.B.146.1.7
TC Rep_461_c_8 Rep_461_c_8_20 19619 22036 - 1.B.14.6.5
Gene ID: Rep_461_c_8_14
Type: CAZyme
Location: 13652 - 14605 (+)
Gene ID: Rep_461_c_8_15
Type:
Location: 14596 - 15711 (+)
Gene ID: Rep_461_c_8_16
Type: CAZyme
Location: 15718 - 16503 (+)
Gene ID: Rep_461_c_8_17
Type: CAZyme
Location: 16508 - 17620 (+)
Gene ID: Rep_461_c_8_18
Type: pfam
Location: 17638 - 18600 (+)
Gene ID: Rep_461_c_8_19
Type: TC
Location: 18638 - 19591 (+)
Gene ID: Rep_461_c_8_20
Type: TC
Location: 19619 - 22036 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_8_19 vegan > omnivore 1.11776 0.00625
Rep_461_c_8_20 vegetarian > omnivore 2.30208 0.00038
Rep_461_c_8_20 vegetarian > vegan 1.75771 0.04499

🧭 Explore Read Mapping of CGC

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