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Cluster: Rep_461_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_7 Rep_461_c_7_86 110365 113472 + 1.B.14.6.2
TC Rep_461_c_7 Rep_461_c_7_87 113487 115139 + 8.A.46.2.2
NULL(UNKNOWN) Rep_461_c_7 Rep_461_c_7_88 115260 117017 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_461_c_7 Rep_461_c_7_89 116995 118101 - GHL10 | DUF4015
CAZyme Rep_461_c_7 Rep_461_c_7_90 118172 119449 + GH171
TC Rep_461_c_7 Rep_461_c_7_91 119482 120927 + 2.A.21.3.7
NULL(UNKNOWN) Rep_461_c_7 Rep_461_c_7_92 120952 124083 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_461_c_7 Rep_461_c_7_93 124107 125966 + Metallophos | PQQ | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4
CAZyme Rep_461_c_7 Rep_461_c_7_94 126000 127463 + GT2
Gene ID: Rep_461_c_7_86
Type: TC
Location: 110365 - 113472 (+)
Gene ID: Rep_461_c_7_87
Type: TC
Location: 113487 - 115139 (+)
Gene ID: Rep_461_c_7_88
Type:
Location: 115260 - 117017 (+)
Gene ID: Rep_461_c_7_89
Type: pfam
Location: 116995 - 118101 (-)
Gene ID: Rep_461_c_7_90
Type: CAZyme
Location: 118172 - 119449 (+)
Gene ID: Rep_461_c_7_91
Type: TC
Location: 119482 - 120927 (+)
Gene ID: Rep_461_c_7_92
Type:
Location: 120952 - 124083 (+)
Gene ID: Rep_461_c_7_93
Type: pfam
Location: 124107 - 125966 (+)
Gene ID: Rep_461_c_7_94
Type: CAZyme
Location: 126000 - 127463 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_7_89 vegan > omnivore 2.78204 0.00625
Rep_461_c_7_89 vegetarian > omnivore 2.17514 0.00038

🧭 Explore Read Mapping of CGC

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