Cluster: Rep_461_CGC3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_0 | Rep_461_c_0_96 | 104788 | 105600 | + | GT2 |
| CAZyme | Rep_461_c_0 | Rep_461_c_0_97 | 105646 | 106386 | + | GT32 |
| NULL(UNKNOWN) | Rep_461_c_0 | Rep_461_c_0_98 | 106393 | 106506 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_461_c_0 | Rep_461_c_0_99 | 106756 | 106983 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_461_c_0 | Rep_461_c_0_100 | 107536 | 108531 | + | GT2 |
| NULL(UNKNOWN) | Rep_461_c_0 | Rep_461_c_0_101 | 108564 | 109841 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_461_c_0 | Rep_461_c_0_102 | 109813 | 110526 | + | GT2 |
| STP | Rep_461_c_0 | Rep_461_c_0_103 | 110540 | 111997 | + | B12-binding |
| CAZyme | Rep_461_c_0 | Rep_461_c_0_104 | 112024 | 112770 | + | GT2 |
| pfam | Rep_461_c_0 | Rep_461_c_0_105 | 112795 | 113691 | + | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| TC | Rep_461_c_0 | Rep_461_c_0_106 | 113789 | 114733 | + | 9.B.146.1.7 |
Gene ID: Rep_461_c_0_96
Type: CAZyme
Location: 104788 - 105600 (+)
Type: CAZyme
Location: 104788 - 105600 (+)
Gene ID: Rep_461_c_0_97
Type: CAZyme
Location: 105646 - 106386 (+)
Type: CAZyme
Location: 105646 - 106386 (+)
Gene ID: Rep_461_c_0_98
Type:
Location: 106393 - 106506 (+)
Type:
Location: 106393 - 106506 (+)
Gene ID: Rep_461_c_0_99
Type:
Location: 106756 - 106983 (+)
Type:
Location: 106756 - 106983 (+)
Gene ID: Rep_461_c_0_100
Type: CAZyme
Location: 107536 - 108531 (+)
Type: CAZyme
Location: 107536 - 108531 (+)
Gene ID: Rep_461_c_0_101
Type:
Location: 108564 - 109841 (+)
Type:
Location: 108564 - 109841 (+)
Gene ID: Rep_461_c_0_102
Type: CAZyme
Location: 109813 - 110526 (+)
Type: CAZyme
Location: 109813 - 110526 (+)
Gene ID: Rep_461_c_0_103
Type: STP
Location: 110540 - 111997 (+)
Type: STP
Location: 110540 - 111997 (+)
Gene ID: Rep_461_c_0_104
Type: CAZyme
Location: 112024 - 112770 (+)
Type: CAZyme
Location: 112024 - 112770 (+)
Gene ID: Rep_461_c_0_105
Type: pfam
Location: 112795 - 113691 (+)
Type: pfam
Location: 112795 - 113691 (+)
Gene ID: Rep_461_c_0_106
Type: TC
Location: 113789 - 114733 (+)
Type: TC
Location: 113789 - 114733 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_0_106 | vegan > omnivore | 1.84916 | 0.00414 |
| Rep_461_c_0_106 | vegetarian > omnivore | 1.14687 | 0.00038 |