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Cluster: Rep_461_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_6 Rep_461_c_6_30 38560 40077 - 2.A.1.14.25
CAZyme Rep_461_c_6 Rep_461_c_6_31 40379 42484 + CE8 | GH105
STP Rep_461_c_6 Rep_461_c_6_32 42575 42922 - AraC_binding
CAZyme Rep_461_c_6 Rep_461_c_6_33 43072 44739 + CE12 | CE8
CAZyme Rep_461_c_6 Rep_461_c_6_34 44784 46100 + CE7
NULL(UNKNOWN) Rep_461_c_6 Rep_461_c_6_35 46115 46354 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_461_c_6 Rep_461_c_6_36 46414 49407 + 1.B.14.6.1
pfam Rep_461_c_6 Rep_461_c_6_37 49428 50960 + SusD_RagB | SusD-like_3
CAZyme Rep_461_c_6 Rep_461_c_6_38 50975 52117 + CE19
TF Rep_461_c_6 Rep_461_c_6_39 52182 56636 - HTH_AraC | HTH_AraC
CAZyme Rep_461_c_6 Rep_461_c_6_40 56624 57778 - CE19
TF Rep_461_c_6 Rep_461_c_6_41 57864 62315 + HTH_AraC
CAZyme Rep_461_c_6 Rep_461_c_6_42 62338 63747 - GH140
sulfatase Rep_461_c_6 Rep_461_c_6_43 63773 64777 - S1_16
NULL(UNKNOWN) Rep_461_c_6 Rep_461_c_6_44 64841 66568 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_461_c_6 Rep_461_c_6_45 66583 68640 - 8.A.46.1.3
TC Rep_461_c_6 Rep_461_c_6_46 68661 71978 - 1.B.14.6.1
CAZyme Rep_461_c_6 Rep_461_c_6_47 72259 74742 - GH95
pfam Rep_461_c_6 Rep_461_c_6_48 74862 75515 - Hydrolase | HAD | Hydrolase_like | HAD_2
CAZyme Rep_461_c_6 Rep_461_c_6_49 75900 77579 - CBM91 | GH43_10
pfam Rep_461_c_6 Rep_461_c_6_50 77708 78928 - DUF4861
CAZyme Rep_461_c_6 Rep_461_c_6_51 79211 80821 - GH28
Gene ID: Rep_461_c_6_30
Type: TC
Location: 38560 - 40077 (-)
Gene ID: Rep_461_c_6_31
Type: CAZyme
Location: 40379 - 42484 (+)
Gene ID: Rep_461_c_6_32
Type: STP
Location: 42575 - 42922 (-)
Gene ID: Rep_461_c_6_33
Type: CAZyme
Location: 43072 - 44739 (+)
Gene ID: Rep_461_c_6_34
Type: CAZyme
Location: 44784 - 46100 (+)
Gene ID: Rep_461_c_6_35
Type:
Location: 46115 - 46354 (+)
Gene ID: Rep_461_c_6_36
Type: TC
Location: 46414 - 49407 (+)
Gene ID: Rep_461_c_6_37
Type: pfam
Location: 49428 - 50960 (+)
Gene ID: Rep_461_c_6_38
Type: CAZyme
Location: 50975 - 52117 (+)
Gene ID: Rep_461_c_6_39
Type: TF
Location: 52182 - 56636 (-)
Gene ID: Rep_461_c_6_40
Type: CAZyme
Location: 56624 - 57778 (-)
Gene ID: Rep_461_c_6_41
Type: TF
Location: 57864 - 62315 (+)
Gene ID: Rep_461_c_6_42
Type: CAZyme
Location: 62338 - 63747 (-)
Gene ID: Rep_461_c_6_43
Type: sulfatase
Location: 63773 - 64777 (-)
Gene ID: Rep_461_c_6_44
Type:
Location: 64841 - 66568 (-)
Gene ID: Rep_461_c_6_45
Type: TC
Location: 66583 - 68640 (-)
Gene ID: Rep_461_c_6_46
Type: TC
Location: 68661 - 71978 (-)
Gene ID: Rep_461_c_6_47
Type: CAZyme
Location: 72259 - 74742 (-)
Gene ID: Rep_461_c_6_48
Type: pfam
Location: 74862 - 75515 (-)
Gene ID: Rep_461_c_6_49
Type: CAZyme
Location: 75900 - 77579 (-)
Gene ID: Rep_461_c_6_50
Type: pfam
Location: 77708 - 78928 (-)
Gene ID: Rep_461_c_6_51
Type: CAZyme
Location: 79211 - 80821 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_6_31 vegetarian > omnivore 1.04075 0.00038
Rep_461_c_6_32 vegan > omnivore 2.61113 0.00625
Rep_461_c_6_32 vegetarian > omnivore 1.90233 0.00038
Rep_461_c_6_38 vegetarian > omnivore 1.18663 0.00038
Rep_461_c_6_50 vegan > omnivore 1.44318 0.00625
Rep_461_c_6_50 vegetarian > omnivore 1.94933 0.00038

🧭 Explore Read Mapping of CGC

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