Cluster: Rep_461_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_461
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_5 | Rep_461_c_5_83 | 108996 | 112073 | + | 1.B.14.6.1 |
| TC | Rep_461_c_5 | Rep_461_c_5_84 | 112092 | 113645 | + | 8.A.46.1.3 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_85 | 113726 | 116131 | + | GH2 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_86 | 116319 | 119759 | + | GH2 | GH43_24 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_87 | 119778 | 122522 | + | GH35 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_88 | 122527 | 123942 | + | CE20 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_89 | 123962 | 125497 | + | GH136 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_90 | 125531 | 127825 | + | GH20 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_91 | 127840 | 129234 | + | GH136 |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_92 | 129240 | 131642 | + | GH35 |
| pfam | Rep_461_c_5 | Rep_461_c_5_93 | 131656 | 133470 | + | DUF5107 | BDI_1685-like_C |
| CAZyme | Rep_461_c_5 | Rep_461_c_5_94 | 133499 | 134941 | + | GH51_6 |
Gene ID: Rep_461_c_5_83
Type: TC
Location: 108996 - 112073 (+)
Type: TC
Location: 108996 - 112073 (+)
Gene ID: Rep_461_c_5_84
Type: TC
Location: 112092 - 113645 (+)
Type: TC
Location: 112092 - 113645 (+)
Gene ID: Rep_461_c_5_85
Type: CAZyme
Location: 113726 - 116131 (+)
Type: CAZyme
Location: 113726 - 116131 (+)
Gene ID: Rep_461_c_5_86
Type: CAZyme
Location: 116319 - 119759 (+)
Type: CAZyme
Location: 116319 - 119759 (+)
Gene ID: Rep_461_c_5_87
Type: CAZyme
Location: 119778 - 122522 (+)
Type: CAZyme
Location: 119778 - 122522 (+)
Gene ID: Rep_461_c_5_88
Type: CAZyme
Location: 122527 - 123942 (+)
Type: CAZyme
Location: 122527 - 123942 (+)
Gene ID: Rep_461_c_5_89
Type: CAZyme
Location: 123962 - 125497 (+)
Type: CAZyme
Location: 123962 - 125497 (+)
Gene ID: Rep_461_c_5_90
Type: CAZyme
Location: 125531 - 127825 (+)
Type: CAZyme
Location: 125531 - 127825 (+)
Gene ID: Rep_461_c_5_91
Type: CAZyme
Location: 127840 - 129234 (+)
Type: CAZyme
Location: 127840 - 129234 (+)
Gene ID: Rep_461_c_5_92
Type: CAZyme
Location: 129240 - 131642 (+)
Type: CAZyme
Location: 129240 - 131642 (+)
Gene ID: Rep_461_c_5_93
Type: pfam
Location: 131656 - 133470 (+)
Type: pfam
Location: 131656 - 133470 (+)
Gene ID: Rep_461_c_5_94
Type: CAZyme
Location: 133499 - 134941 (+)
Type: CAZyme
Location: 133499 - 134941 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_5_83 | vegan > omnivore | 2.91844 | 0.00625 |
| Rep_461_c_5_84 | vegan > omnivore | 2.70776 | 0.00625 |
| Rep_461_c_5_85 | vegan > omnivore | 1.84718 | 0.00625 |
| Rep_461_c_5_86 | vegan > omnivore | 2.44231 | 0.00625 |
| Rep_461_c_5_87 | vegan > omnivore | 2.89433 | 0.00625 |
| Rep_461_c_5_88 | vegan > omnivore | 2.58887 | 0.00625 |
| Rep_461_c_5_89 | vegan > omnivore | 3.56331 | 0.00625 |
| Rep_461_c_5_89 | vegetarian > omnivore | 1.22542 | 0.00038 |
| Rep_461_c_5_90 | vegan > omnivore | 2.43583 | 0.00625 |
| Rep_461_c_5_91 | vegan > omnivore | 3.58547 | 0.00625 |
| Rep_461_c_5_92 | vegetarian > omnivore | 1.00287 | 0.00038 |
| Rep_461_c_5_92 | vegan > omnivore | 3.50244 | 0.00625 |
| Rep_461_c_5_93 | vegan > omnivore | 2.98434 | 0.00625 |
| Rep_461_c_5_94 | vegetarian > omnivore | 1.25149 | 0.00038 |
| Rep_461_c_5_94 | vegan > omnivore | 3.09932 | 0.00625 |