Cluster: Rep_461_CGC22
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 14
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_01176
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_4 | Rep_461_c_4_3 | 4386 | 7634 | + | 1.B.14.6.1 |
| pfam | Rep_461_c_4 | Rep_461_c_4_4 | 7657 | 9711 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_5 | 9821 | 10825 | + | GH43_3 |
| sulfatase | Rep_461_c_4 | Rep_461_c_4_6 | 10893 | 12029 | + | S1_22 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_7 | 12026 | 13189 | + | GH105 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_8 | 13438 | 14403 | + | GH43_31 |
| TF | Rep_461_c_4 | Rep_461_c_4_9 | 14923 | 18948 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_10 | 19360 | 20463 | + | GH105 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_11 | 20516 | 23236 | + | GH2 |
| sulfatase | Rep_461_c_4 | Rep_461_c_4_12 | 23248 | 25110 | + | S1_24 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_13 | 25149 | 26297 | + | GH130_3 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_14 | 26362 | 27468 | + | GH105 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_15 | 27494 | 30448 | + | GH115 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_16 | 30462 | 33008 | + | GH31_15 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_17 | 33352 | 36105 | + | GH63 |
| TC | Rep_461_c_4 | Rep_461_c_4_18 | 36430 | 39552 | + | 1.B.14.6.1 |
| TC | Rep_461_c_4 | Rep_461_c_4_19 | 39588 | 41411 | + | 8.A.46.1.6 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_20 | 41414 | 42442 | + | GH43_3 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_21 | 42507 | 43433 | + | GH43_3 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_22 | 43484 | 45490 | + | GH182 |
| pfam | Rep_461_c_4 | Rep_461_c_4_23 | 45820 | 46230 | - | YbeY |
| TC | Rep_461_c_4 | Rep_461_c_4_24 | 46257 | 47489 | - | 9.B.156.3.1 |
| CAZyme | Rep_461_c_4 | Rep_461_c_4_25 | 47648 | 49606 | + | CE20 | CE20 |
Gene ID: Rep_461_c_4_3
Type: TC
Location: 4386 - 7634 (+)
Type: TC
Location: 4386 - 7634 (+)
Gene ID: Rep_461_c_4_4
Type: pfam
Location: 7657 - 9711 (+)
Type: pfam
Location: 7657 - 9711 (+)
Gene ID: Rep_461_c_4_5
Type: CAZyme
Location: 9821 - 10825 (+)
Type: CAZyme
Location: 9821 - 10825 (+)
Gene ID: Rep_461_c_4_6
Type: sulfatase
Location: 10893 - 12029 (+)
Type: sulfatase
Location: 10893 - 12029 (+)
Gene ID: Rep_461_c_4_7
Type: CAZyme
Location: 12026 - 13189 (+)
Type: CAZyme
Location: 12026 - 13189 (+)
Gene ID: Rep_461_c_4_8
Type: CAZyme
Location: 13438 - 14403 (+)
Type: CAZyme
Location: 13438 - 14403 (+)
Gene ID: Rep_461_c_4_9
Type: TF
Location: 14923 - 18948 (+)
Type: TF
Location: 14923 - 18948 (+)
Gene ID: Rep_461_c_4_10
Type: CAZyme
Location: 19360 - 20463 (+)
Type: CAZyme
Location: 19360 - 20463 (+)
Gene ID: Rep_461_c_4_11
Type: CAZyme
Location: 20516 - 23236 (+)
Type: CAZyme
Location: 20516 - 23236 (+)
Gene ID: Rep_461_c_4_12
Type: sulfatase
Location: 23248 - 25110 (+)
Type: sulfatase
Location: 23248 - 25110 (+)
Gene ID: Rep_461_c_4_13
Type: CAZyme
Location: 25149 - 26297 (+)
Type: CAZyme
Location: 25149 - 26297 (+)
Gene ID: Rep_461_c_4_14
Type: CAZyme
Location: 26362 - 27468 (+)
Type: CAZyme
Location: 26362 - 27468 (+)
Gene ID: Rep_461_c_4_15
Type: CAZyme
Location: 27494 - 30448 (+)
Type: CAZyme
Location: 27494 - 30448 (+)
Gene ID: Rep_461_c_4_16
Type: CAZyme
Location: 30462 - 33008 (+)
Type: CAZyme
Location: 30462 - 33008 (+)
Gene ID: Rep_461_c_4_17
Type: CAZyme
Location: 33352 - 36105 (+)
Type: CAZyme
Location: 33352 - 36105 (+)
Gene ID: Rep_461_c_4_18
Type: TC
Location: 36430 - 39552 (+)
Type: TC
Location: 36430 - 39552 (+)
Gene ID: Rep_461_c_4_19
Type: TC
Location: 39588 - 41411 (+)
Type: TC
Location: 39588 - 41411 (+)
Gene ID: Rep_461_c_4_20
Type: CAZyme
Location: 41414 - 42442 (+)
Type: CAZyme
Location: 41414 - 42442 (+)
Gene ID: Rep_461_c_4_21
Type: CAZyme
Location: 42507 - 43433 (+)
Type: CAZyme
Location: 42507 - 43433 (+)
Gene ID: Rep_461_c_4_22
Type: CAZyme
Location: 43484 - 45490 (+)
Type: CAZyme
Location: 43484 - 45490 (+)
Gene ID: Rep_461_c_4_23
Type: pfam
Location: 45820 - 46230 (-)
Type: pfam
Location: 45820 - 46230 (-)
Gene ID: Rep_461_c_4_24
Type: TC
Location: 46257 - 47489 (-)
Type: TC
Location: 46257 - 47489 (-)
Gene ID: Rep_461_c_4_25
Type: CAZyme
Location: 47648 - 49606 (+)
Type: CAZyme
Location: 47648 - 49606 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_4_5 | vegan > omnivore | 1.03703 | 0.00625 |
| Rep_461_c_4_8 | vegan > omnivore | 1.78361 | 0.00625 |
| Rep_461_c_4_10 | vegan > omnivore | 3.17360 | 0.00414 |
| Rep_461_c_4_10 | vegetarian > omnivore | 2.17622 | 0.00038 |
| Rep_461_c_4_13 | vegan > omnivore | 3.12560 | 0.00625 |
| Rep_461_c_4_13 | vegetarian > omnivore | 1.89956 | 0.00038 |
| Rep_461_c_4_14 | vegan > omnivore | 1.60183 | 0.00625 |
| Rep_461_c_4_15 | vegan > omnivore | 1.86346 | 0.00625 |
| Rep_461_c_4_16 | vegan > omnivore | 1.82421 | 0.00625 |
| Rep_461_c_4_16 | vegetarian > omnivore | 1.33050 | 0.00038 |
| Rep_461_c_4_18 | vegan > omnivore | 3.68408 | 0.00625 |
| Rep_461_c_4_18 | vegetarian > omnivore | 2.62504 | 0.00038 |
| Rep_461_c_4_19 | vegan > omnivore | 2.99014 | 0.00625 |
| Rep_461_c_4_19 | vegetarian > omnivore | 1.84601 | 0.00038 |
| Rep_461_c_4_20 | vegan > omnivore | 4.49107 | 0.00625 |
| Rep_461_c_4_20 | vegetarian > omnivore | 3.20635 | 0.00038 |
| Rep_461_c_4_21 | vegan > omnivore | 1.29099 | 0.00625 |