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Cluster: Rep_461_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_3 Rep_461_c_3_100 114517 117516 + 1.B.14.6.1
TC Rep_461_c_3 Rep_461_c_3_101 117528 119018 + 8.A.46.1.5
pfam Rep_461_c_3 Rep_461_c_3_102 119041 120534 + SusE | SusF_SusE | SusF_SusE
CAZyme Rep_461_c_3 Rep_461_c_3_103 120655 122445 + GH66
CAZyme Rep_461_c_3 Rep_461_c_3_104 122787 125285 + GH31
CAZyme Rep_461_c_3 Rep_461_c_3_105 125365 127518 + GH97
pfam Rep_461_c_3 Rep_461_c_3_106 127826 128536 - DUF169
CAZyme Rep_461_c_3 Rep_461_c_3_107 128638 130662 + GH65
TC Rep_461_c_3 Rep_461_c_3_108 130844 132508 - 4.C.1.1.16
TC Rep_461_c_3 Rep_461_c_3_109 132718 134175 - 2.A.36.6.3
STP Rep_461_c_3 Rep_461_c_3_110 134429 135796 - HATPase_c
TF Rep_461_c_3 Rep_461_c_3_111 135793 137145 - HTH_8
CAZyme Rep_461_c_3 Rep_461_c_3_112 137333 138472 + GT1
Gene ID: Rep_461_c_3_100
Type: TC
Location: 114517 - 117516 (+)
Gene ID: Rep_461_c_3_101
Type: TC
Location: 117528 - 119018 (+)
Gene ID: Rep_461_c_3_102
Type: pfam
Location: 119041 - 120534 (+)
Gene ID: Rep_461_c_3_103
Type: CAZyme
Location: 120655 - 122445 (+)
Gene ID: Rep_461_c_3_104
Type: CAZyme
Location: 122787 - 125285 (+)
Gene ID: Rep_461_c_3_105
Type: CAZyme
Location: 125365 - 127518 (+)
Gene ID: Rep_461_c_3_106
Type: pfam
Location: 127826 - 128536 (-)
Gene ID: Rep_461_c_3_107
Type: CAZyme
Location: 128638 - 130662 (+)
Gene ID: Rep_461_c_3_108
Type: TC
Location: 130844 - 132508 (-)
Gene ID: Rep_461_c_3_109
Type: TC
Location: 132718 - 134175 (-)
Gene ID: Rep_461_c_3_110
Type: STP
Location: 134429 - 135796 (-)
Gene ID: Rep_461_c_3_111
Type: TF
Location: 135793 - 137145 (-)
Gene ID: Rep_461_c_3_112
Type: CAZyme
Location: 137333 - 138472 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_3_106 vegan > omnivore 1.51061 0.00625
Rep_461_c_3_106 vegetarian > omnivore 1.51115 0.00038
Rep_461_c_3_107 vegan > omnivore 2.32036 0.00625
Rep_461_c_3_107 vegetarian > omnivore 2.80455 0.00038

🧭 Explore Read Mapping of CGC

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