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Cluster: Rep_461_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_3 Rep_461_c_3_16 12290 13450 + GT4
CAZyme Rep_461_c_3 Rep_461_c_3_17 13475 14353 + GT2
CAZyme Rep_461_c_3 Rep_461_c_3_18 14369 15511 + GT4
pfam Rep_461_c_3 Rep_461_c_3_19 15508 17118 - Sulfatase
CAZyme Rep_461_c_3 Rep_461_c_3_20 17121 18008 - GT2
CAZyme Rep_461_c_3 Rep_461_c_3_21 18018 18977 - GT2
NULL(UNKNOWN) Rep_461_c_3 Rep_461_c_3_22 19029 19289 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_461_c_3 Rep_461_c_3_23 19450 20430 + GT2
TC Rep_461_c_3 Rep_461_c_3_24 20480 21928 - 2.A.66.2.23
NULL(UNKNOWN) Rep_461_c_3 Rep_461_c_3_25 21931 23067 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_461_c_3 Rep_461_c_3_26 23088 24209 - GT4
CAZyme Rep_461_c_3 Rep_461_c_3_27 24215 25441 - GT2
Gene ID: Rep_461_c_3_16
Type: CAZyme
Location: 12290 - 13450 (+)
Gene ID: Rep_461_c_3_17
Type: CAZyme
Location: 13475 - 14353 (+)
Gene ID: Rep_461_c_3_18
Type: CAZyme
Location: 14369 - 15511 (+)
Gene ID: Rep_461_c_3_19
Type: pfam
Location: 15508 - 17118 (-)
Gene ID: Rep_461_c_3_20
Type: CAZyme
Location: 17121 - 18008 (-)
Gene ID: Rep_461_c_3_21
Type: CAZyme
Location: 18018 - 18977 (-)
Gene ID: Rep_461_c_3_22
Type:
Location: 19029 - 19289 (+)
Gene ID: Rep_461_c_3_23
Type: CAZyme
Location: 19450 - 20430 (+)
Gene ID: Rep_461_c_3_24
Type: TC
Location: 20480 - 21928 (-)
Gene ID: Rep_461_c_3_25
Type:
Location: 21931 - 23067 (-)
Gene ID: Rep_461_c_3_26
Type: CAZyme
Location: 23088 - 24209 (-)
Gene ID: Rep_461_c_3_27
Type: CAZyme
Location: 24215 - 25441 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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