Cluster: Rep_461_CGC18
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_05259
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_2 | Rep_461_c_2_34 | 75129 | 78392 | - | 1.B.14.6.1 |
| STP | Rep_461_c_2 | Rep_461_c_2_35 | 78573 | 79112 | + | Sigma70_r2 | Sigma70_r4_2 |
| TF | Rep_461_c_2 | Rep_461_c_2_36 | 79354 | 83643 | + | HTH_AraC |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_37 | 83737 | 86748 | + | GH2 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_38 | 87253 | 90111 | - | GH2 |
| TC | Rep_461_c_2 | Rep_461_c_2_39 | 90241 | 91974 | - | 8.A.46.1.3 |
| TC | Rep_461_c_2 | Rep_461_c_2_40 | 92004 | 94820 | - | 1.B.14.6.1 |
| pfam | Rep_461_c_2 | Rep_461_c_2_41 | 94871 | 96919 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_461_c_2 | Rep_461_c_2_42 | 96926 | 100093 | - | 1.B.14.6.1 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_43 | 100515 | 101966 | - | CE20 |
| pfam | Rep_461_c_2 | Rep_461_c_2_44 | 102007 | 102900 | - | SASA |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_45 | 102973 | 104013 | - | CE4 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_46 | 104323 | 105921 | + | GH28 |
| NULL(UNKNOWN) | Rep_461_c_2 | Rep_461_c_2_47 | 106046 | 106465 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_461_c_2 | Rep_461_c_2_48 | 106769 | 107641 | + | FecR |
| TC | Rep_461_c_2 | Rep_461_c_2_49 | 107643 | 110426 | + | 1.B.14.6.12 |
Gene ID: Rep_461_c_2_34
Type: TC
Location: 75129 - 78392 (-)
Type: TC
Location: 75129 - 78392 (-)
Gene ID: Rep_461_c_2_35
Type: STP
Location: 78573 - 79112 (+)
Type: STP
Location: 78573 - 79112 (+)
Gene ID: Rep_461_c_2_36
Type: TF
Location: 79354 - 83643 (+)
Type: TF
Location: 79354 - 83643 (+)
Gene ID: Rep_461_c_2_37
Type: CAZyme
Location: 83737 - 86748 (+)
Type: CAZyme
Location: 83737 - 86748 (+)
Gene ID: Rep_461_c_2_38
Type: CAZyme
Location: 87253 - 90111 (-)
Type: CAZyme
Location: 87253 - 90111 (-)
Gene ID: Rep_461_c_2_39
Type: TC
Location: 90241 - 91974 (-)
Type: TC
Location: 90241 - 91974 (-)
Gene ID: Rep_461_c_2_40
Type: TC
Location: 92004 - 94820 (-)
Type: TC
Location: 92004 - 94820 (-)
Gene ID: Rep_461_c_2_41
Type: pfam
Location: 94871 - 96919 (-)
Type: pfam
Location: 94871 - 96919 (-)
Gene ID: Rep_461_c_2_42
Type: TC
Location: 96926 - 100093 (-)
Type: TC
Location: 96926 - 100093 (-)
Gene ID: Rep_461_c_2_43
Type: CAZyme
Location: 100515 - 101966 (-)
Type: CAZyme
Location: 100515 - 101966 (-)
Gene ID: Rep_461_c_2_44
Type: pfam
Location: 102007 - 102900 (-)
Type: pfam
Location: 102007 - 102900 (-)
Gene ID: Rep_461_c_2_45
Type: CAZyme
Location: 102973 - 104013 (-)
Type: CAZyme
Location: 102973 - 104013 (-)
Gene ID: Rep_461_c_2_46
Type: CAZyme
Location: 104323 - 105921 (+)
Type: CAZyme
Location: 104323 - 105921 (+)
Gene ID: Rep_461_c_2_47
Type:
Location: 106046 - 106465 (+)
Type:
Location: 106046 - 106465 (+)
Gene ID: Rep_461_c_2_48
Type: STP
Location: 106769 - 107641 (+)
Type: STP
Location: 106769 - 107641 (+)
Gene ID: Rep_461_c_2_49
Type: TC
Location: 107643 - 110426 (+)
Type: TC
Location: 107643 - 110426 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_2_48 | vegan > omnivore | 3.03193 | 0.00625 |
| Rep_461_c_2_48 | vegetarian > omnivore | 2.79084 | 0.00038 |