Cluster: Rep_461_CGC17
🧬 Cluster Details
- Gene Count: 29
- CAZyme Count: 18
- Substrate:
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_00217
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_461_c_2 | Rep_461_c_2_2 | 1399 | 4719 | + | GH35 | GH43_24 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_3 | 5102 | 8002 | - | GH115 |
| TC | Rep_461_c_2 | Rep_461_c_2_4 | 8238 | 9908 | - | 8.A.46.1.6 |
| TC | Rep_461_c_2 | Rep_461_c_2_5 | 9920 | 12886 | - | 1.B.14.6.1 |
| TF | Rep_461_c_2 | Rep_461_c_2_6 | 13227 | 17258 | + | HTH_AraC |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_7 | 17329 | 19653 | - | GH115 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_8 | 19687 | 21393 | - | CE12 | CE4 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_9 | 21477 | 22847 | - | GH43_24 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_10 | 22873 | 24273 | - | GH28 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_11 | 24276 | 26360 | - | PL27 |
| pfam | Rep_461_c_2 | Rep_461_c_2_12 | 26457 | 28481 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_461_c_2 | Rep_461_c_2_13 | 28494 | 31817 | - | 1.B.14.6.1 |
| TF | Rep_461_c_2 | Rep_461_c_2_14 | 32425 | 36456 | + | HTH_AraC |
| STP | Rep_461_c_2 | Rep_461_c_2_15 | 36528 | 39206 | - | HATPase_c | HisKA | Response_reg |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_16 | 39475 | 40464 | - | GH43_17 |
| NULL(UNKNOWN) | Rep_461_c_2 | Rep_461_c_2_17 | 40496 | 40669 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_18 | 40586 | 43681 | - | GH2 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_19 | 43891 | 45822 | - | GH51_2 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_20 | 45832 | 48366 | - | GH51_2 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_21 | 48386 | 51313 | - | GH43_19 | GH97 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_22 | 51355 | 53295 | - | GH43_19 | GH43_34 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_23 | 53406 | 54536 | - | GH105 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_24 | 54781 | 56094 | - | PL42 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_25 | 56134 | 57384 | - | GH154 |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_26 | 57526 | 58650 | - | GH43_24 |
| pfam | Rep_461_c_2 | Rep_461_c_2_27 | 58756 | 60768 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_461_c_2 | Rep_461_c_2_28 | 60784 | 64071 | - | 1.B.14.6.1 |
| TF | Rep_461_c_2 | Rep_461_c_2_29 | 64293 | 68495 | - | HTH_AraC |
| CAZyme | Rep_461_c_2 | Rep_461_c_2_30 | 68841 | 70856 | + | GH154 |
Gene ID: Rep_461_c_2_2
Type: CAZyme
Location: 1399 - 4719 (+)
Type: CAZyme
Location: 1399 - 4719 (+)
Gene ID: Rep_461_c_2_3
Type: CAZyme
Location: 5102 - 8002 (-)
Type: CAZyme
Location: 5102 - 8002 (-)
Gene ID: Rep_461_c_2_4
Type: TC
Location: 8238 - 9908 (-)
Type: TC
Location: 8238 - 9908 (-)
Gene ID: Rep_461_c_2_5
Type: TC
Location: 9920 - 12886 (-)
Type: TC
Location: 9920 - 12886 (-)
Gene ID: Rep_461_c_2_6
Type: TF
Location: 13227 - 17258 (+)
Type: TF
Location: 13227 - 17258 (+)
Gene ID: Rep_461_c_2_7
Type: CAZyme
Location: 17329 - 19653 (-)
Type: CAZyme
Location: 17329 - 19653 (-)
Gene ID: Rep_461_c_2_8
Type: CAZyme
Location: 19687 - 21393 (-)
Type: CAZyme
Location: 19687 - 21393 (-)
Gene ID: Rep_461_c_2_9
Type: CAZyme
Location: 21477 - 22847 (-)
Type: CAZyme
Location: 21477 - 22847 (-)
Gene ID: Rep_461_c_2_10
Type: CAZyme
Location: 22873 - 24273 (-)
Type: CAZyme
Location: 22873 - 24273 (-)
Gene ID: Rep_461_c_2_11
Type: CAZyme
Location: 24276 - 26360 (-)
Type: CAZyme
Location: 24276 - 26360 (-)
Gene ID: Rep_461_c_2_12
Type: pfam
Location: 26457 - 28481 (-)
Type: pfam
Location: 26457 - 28481 (-)
Gene ID: Rep_461_c_2_13
Type: TC
Location: 28494 - 31817 (-)
Type: TC
Location: 28494 - 31817 (-)
Gene ID: Rep_461_c_2_14
Type: TF
Location: 32425 - 36456 (+)
Type: TF
Location: 32425 - 36456 (+)
Gene ID: Rep_461_c_2_15
Type: STP
Location: 36528 - 39206 (-)
Type: STP
Location: 36528 - 39206 (-)
Gene ID: Rep_461_c_2_16
Type: CAZyme
Location: 39475 - 40464 (-)
Type: CAZyme
Location: 39475 - 40464 (-)
Gene ID: Rep_461_c_2_17
Type:
Location: 40496 - 40669 (+)
Type:
Location: 40496 - 40669 (+)
Gene ID: Rep_461_c_2_18
Type: CAZyme
Location: 40586 - 43681 (-)
Type: CAZyme
Location: 40586 - 43681 (-)
Gene ID: Rep_461_c_2_19
Type: CAZyme
Location: 43891 - 45822 (-)
Type: CAZyme
Location: 43891 - 45822 (-)
Gene ID: Rep_461_c_2_20
Type: CAZyme
Location: 45832 - 48366 (-)
Type: CAZyme
Location: 45832 - 48366 (-)
Gene ID: Rep_461_c_2_21
Type: CAZyme
Location: 48386 - 51313 (-)
Type: CAZyme
Location: 48386 - 51313 (-)
Gene ID: Rep_461_c_2_22
Type: CAZyme
Location: 51355 - 53295 (-)
Type: CAZyme
Location: 51355 - 53295 (-)
Gene ID: Rep_461_c_2_23
Type: CAZyme
Location: 53406 - 54536 (-)
Type: CAZyme
Location: 53406 - 54536 (-)
Gene ID: Rep_461_c_2_24
Type: CAZyme
Location: 54781 - 56094 (-)
Type: CAZyme
Location: 54781 - 56094 (-)
Gene ID: Rep_461_c_2_25
Type: CAZyme
Location: 56134 - 57384 (-)
Type: CAZyme
Location: 56134 - 57384 (-)
Gene ID: Rep_461_c_2_26
Type: CAZyme
Location: 57526 - 58650 (-)
Type: CAZyme
Location: 57526 - 58650 (-)
Gene ID: Rep_461_c_2_27
Type: pfam
Location: 58756 - 60768 (-)
Type: pfam
Location: 58756 - 60768 (-)
Gene ID: Rep_461_c_2_28
Type: TC
Location: 60784 - 64071 (-)
Type: TC
Location: 60784 - 64071 (-)
Gene ID: Rep_461_c_2_29
Type: TF
Location: 64293 - 68495 (-)
Type: TF
Location: 64293 - 68495 (-)
Gene ID: Rep_461_c_2_30
Type: CAZyme
Location: 68841 - 70856 (+)
Type: CAZyme
Location: 68841 - 70856 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_2_3 | vegetarian > vegan | 3.13273 | 0.04499 |
| Rep_461_c_2_4 | vegetarian > vegan | 3.38265 | 0.04499 |
| Rep_461_c_2_5 | vegetarian > vegan | 3.99832 | 0.02765 |
| Rep_461_c_2_6 | vegetarian > vegan | 3.84112 | 0.03353 |
| Rep_461_c_2_10 | vegan > omnivore | 1.78158 | 0.00625 |
| Rep_461_c_2_16 | vegan > omnivore | 3.15452 | 0.00625 |
| Rep_461_c_2_16 | vegetarian > omnivore | 4.06387 | 0.00038 |
| Rep_461_c_2_23 | vegetarian > omnivore | 1.43898 | 0.00038 |