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Cluster: Rep_461_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_1 Rep_461_c_1_48 70592 73849 + 1.B.14.6.1
pfam Rep_461_c_1 Rep_461_c_1_49 73871 75859 + SusD_RagB
pfam Rep_461_c_1 Rep_461_c_1_50 75883 77046 + F5_F8_type_C | Big_2
CAZyme Rep_461_c_1 Rep_461_c_1_51 77135 78361 + GH154
NULL(UNKNOWN) Rep_461_c_1 Rep_461_c_1_52 78396 78602 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_461_c_1 Rep_461_c_1_53 79032 83060 + HTH_AraC
CAZyme Rep_461_c_1 Rep_461_c_1_54 83020 84594 + GH29
CAZyme Rep_461_c_1 Rep_461_c_1_55 84671 85795 + GH105
CAZyme Rep_461_c_1 Rep_461_c_1_56 85785 87899 + GH2
CAZyme Rep_461_c_1 Rep_461_c_1_57 87954 89498 + GH109
Gene ID: Rep_461_c_1_48
Type: TC
Location: 70592 - 73849 (+)
Gene ID: Rep_461_c_1_49
Type: pfam
Location: 73871 - 75859 (+)
Gene ID: Rep_461_c_1_50
Type: pfam
Location: 75883 - 77046 (+)
Gene ID: Rep_461_c_1_51
Type: CAZyme
Location: 77135 - 78361 (+)
Gene ID: Rep_461_c_1_52
Type:
Location: 78396 - 78602 (-)
Gene ID: Rep_461_c_1_53
Type: TF
Location: 79032 - 83060 (+)
Gene ID: Rep_461_c_1_54
Type: CAZyme
Location: 83020 - 84594 (+)
Gene ID: Rep_461_c_1_55
Type: CAZyme
Location: 84671 - 85795 (+)
Gene ID: Rep_461_c_1_56
Type: CAZyme
Location: 85785 - 87899 (+)
Gene ID: Rep_461_c_1_57
Type: CAZyme
Location: 87954 - 89498 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_1_48 vegan > omnivore 1.74073 0.00625
Rep_461_c_1_49 vegan > omnivore 1.90114 0.00625

🧭 Explore Read Mapping of CGC

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