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Cluster: Rep_461_CGC108

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_72 Rep_461_c_72_1 390 1991 - GH32
pfam Rep_461_c_72 Rep_461_c_72_2 2003 3406 - DUF4960
TC Rep_461_c_72 Rep_461_c_72_3 3428 5161 - 8.A.46.1.5
TC Rep_461_c_72 Rep_461_c_72_4 5181 8288 - 1.B.14.6.1
CAZyme Rep_461_c_72 Rep_461_c_72_5 8582 10384 + GH32
pfam Rep_461_c_72 Rep_461_c_72_6 10485 11357 - Aldose_epim
TC Rep_461_c_72 Rep_461_c_72_7 11565 12725 + 2.A.1.7.17
Gene ID: Rep_461_c_72_1
Type: CAZyme
Location: 390 - 1991 (-)
Gene ID: Rep_461_c_72_2
Type: pfam
Location: 2003 - 3406 (-)
Gene ID: Rep_461_c_72_3
Type: TC
Location: 3428 - 5161 (-)
Gene ID: Rep_461_c_72_4
Type: TC
Location: 5181 - 8288 (-)
Gene ID: Rep_461_c_72_5
Type: CAZyme
Location: 8582 - 10384 (+)
Gene ID: Rep_461_c_72_6
Type: pfam
Location: 10485 - 11357 (-)
Gene ID: Rep_461_c_72_7
Type: TC
Location: 11565 - 12725 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_72_1 vegetarian > omnivore 1.29013 0.00038
Rep_461_c_72_3 vegan > omnivore 2.60314 0.00625
Rep_461_c_72_3 vegetarian > omnivore 3.42547 0.00038
Rep_461_c_72_6 vegan > omnivore 1.35333 0.00257

🧭 Explore Read Mapping of CGC

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