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Cluster: Rep_461_CGC106

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_461_c_63 Rep_461_c_63_9 5341 7953 - 1.B.14.6.14
CAZyme Rep_461_c_63 Rep_461_c_63_10 8164 9027 + GT2
pfam Rep_461_c_63 Rep_461_c_63_11 9000 10133 - Epimerase_2
TC Rep_461_c_63 Rep_461_c_63_12 10264 10890 + 1.A.62.2.1
peptidase Rep_461_c_63 Rep_461_c_63_13 10984 13884 - M16.019
STP Rep_461_c_63 Rep_461_c_63_14 14152 14655 + Sigma70_r2 | Sigma70_r4_2
TC Rep_461_c_63 Rep_461_c_63_15 14996 16771 + 3.B.1.1.6
STP Rep_461_c_63 Rep_461_c_63_16 16859 19525 - HATPase_c | HisKA | Response_reg
CAZyme Rep_461_c_63 Rep_461_c_63_17 19565 20761 - GT2
Gene ID: Rep_461_c_63_9
Type: TC
Location: 5341 - 7953 (-)
Gene ID: Rep_461_c_63_10
Type: CAZyme
Location: 8164 - 9027 (+)
Gene ID: Rep_461_c_63_11
Type: pfam
Location: 9000 - 10133 (-)
Gene ID: Rep_461_c_63_12
Type: TC
Location: 10264 - 10890 (+)
Gene ID: Rep_461_c_63_13
Type: peptidase
Location: 10984 - 13884 (-)
Gene ID: Rep_461_c_63_14
Type: STP
Location: 14152 - 14655 (+)
Gene ID: Rep_461_c_63_15
Type: TC
Location: 14996 - 16771 (+)
Gene ID: Rep_461_c_63_16
Type: STP
Location: 16859 - 19525 (-)
Gene ID: Rep_461_c_63_17
Type: CAZyme
Location: 19565 - 20761 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_461_c_63_13 vegetarian > omnivore 1.04533 0.00038

🧭 Explore Read Mapping of CGC

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