Cluster: Rep_461_CGC100
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: pectin
- Genome ID: Rep_461
- CGC Family ID: CGCFAM_01238
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_461_c_46 | Rep_461_c_46_3 | 2941 | 5802 | - | 1.B.14.12.2 |
| CAZyme | Rep_461_c_46 | Rep_461_c_46_4 | 5862 | 7442 | - | CBM91 | GH43_10 |
| CAZyme | Rep_461_c_46 | Rep_461_c_46_5 | 7455 | 8843 | - | GH43_34 |
| pfam | Rep_461_c_46 | Rep_461_c_46_6 | 8994 | 9377 | - | rhaM |
| TC | Rep_461_c_46 | Rep_461_c_46_7 | 9479 | 11164 | - | 8.A.46.1.5 |
| TC | Rep_461_c_46 | Rep_461_c_46_8 | 11189 | 14239 | - | 1.B.14.6.1 |
| CAZyme | Rep_461_c_46 | Rep_461_c_46_9 | 14360 | 16033 | - | GH29 |
| TF | Rep_461_c_46 | Rep_461_c_46_10 | 16220 | 17077 | + | HTH_AraC | HTH_AraC |
| sulfatase | Rep_461_c_46 | Rep_461_c_46_11 | 17271 | 18401 | - | S1_22 |
| CAZyme | Rep_461_c_46 | Rep_461_c_46_12 | 18409 | 19941 | - | CBM91 | GH43_10 |
| CAZyme | Rep_461_c_46 | Rep_461_c_46_13 | 19989 | 22856 | - | GH2 | GH43_26 |
| TC | Rep_461_c_46 | Rep_461_c_46_14 | 22960 | 24222 | - | 2.A.1.7.2 |
| CAZyme | Rep_461_c_46 | Rep_461_c_46_15 | 24402 | 26333 | - | GH146 |
Gene ID: Rep_461_c_46_3
Type: TC
Location: 2941 - 5802 (-)
Type: TC
Location: 2941 - 5802 (-)
Gene ID: Rep_461_c_46_4
Type: CAZyme
Location: 5862 - 7442 (-)
Type: CAZyme
Location: 5862 - 7442 (-)
Gene ID: Rep_461_c_46_5
Type: CAZyme
Location: 7455 - 8843 (-)
Type: CAZyme
Location: 7455 - 8843 (-)
Gene ID: Rep_461_c_46_6
Type: pfam
Location: 8994 - 9377 (-)
Type: pfam
Location: 8994 - 9377 (-)
Gene ID: Rep_461_c_46_7
Type: TC
Location: 9479 - 11164 (-)
Type: TC
Location: 9479 - 11164 (-)
Gene ID: Rep_461_c_46_8
Type: TC
Location: 11189 - 14239 (-)
Type: TC
Location: 11189 - 14239 (-)
Gene ID: Rep_461_c_46_9
Type: CAZyme
Location: 14360 - 16033 (-)
Type: CAZyme
Location: 14360 - 16033 (-)
Gene ID: Rep_461_c_46_10
Type: TF
Location: 16220 - 17077 (+)
Type: TF
Location: 16220 - 17077 (+)
Gene ID: Rep_461_c_46_11
Type: sulfatase
Location: 17271 - 18401 (-)
Type: sulfatase
Location: 17271 - 18401 (-)
Gene ID: Rep_461_c_46_12
Type: CAZyme
Location: 18409 - 19941 (-)
Type: CAZyme
Location: 18409 - 19941 (-)
Gene ID: Rep_461_c_46_13
Type: CAZyme
Location: 19989 - 22856 (-)
Type: CAZyme
Location: 19989 - 22856 (-)
Gene ID: Rep_461_c_46_14
Type: TC
Location: 22960 - 24222 (-)
Type: TC
Location: 22960 - 24222 (-)
Gene ID: Rep_461_c_46_15
Type: CAZyme
Location: 24402 - 26333 (-)
Type: CAZyme
Location: 24402 - 26333 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905207245
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_461_c_46_4 | vegetarian > vegan | 1.33977 | 0.02765 |
| Rep_461_c_46_6 | vegan > omnivore | 1.53110 | 0.00625 |
| Rep_461_c_46_6 | vegetarian > omnivore | 3.35771 | 0.00038 |
| Rep_461_c_46_6 | vegetarian > vegan | 1.82661 | 0.04499 |
| Rep_461_c_46_10 | vegan > omnivore | 2.00594 | 0.00625 |
| Rep_461_c_46_10 | vegetarian > omnivore | 1.51414 | 0.00038 |
| Rep_461_c_46_11 | vegan > omnivore | 2.08254 | 0.00625 |
| Rep_461_c_46_11 | vegetarian > omnivore | 1.68076 | 0.00038 |