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Cluster: Rep_461_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_461_c_1 Rep_461_c_1_30 37041 38348 - GH88
CAZyme Rep_461_c_1 Rep_461_c_1_31 38362 40398 - PL12_2
NULL(UNKNOWN) Rep_461_c_1 Rep_461_c_1_32 40487 41062 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_461_c_1 Rep_461_c_1_33 41075 42763 - SusD_RagB | SusD-like_3
TC Rep_461_c_1 Rep_461_c_1_34 42780 45899 - 1.B.14.6.1
CAZyme Rep_461_c_1 Rep_461_c_1_35 45945 48446 - PL15
CAZyme Rep_461_c_1 Rep_461_c_1_36 48499 51054 - PL15
TF Rep_461_c_1 Rep_461_c_1_37 51291 55343 - HTH_AraC
TC Rep_461_c_1 Rep_461_c_1_38 55849 58059 + 3.A.7.7.1
TC Rep_461_c_1 Rep_461_c_1_39 58133 60136 + 1.B.6.1.14
Gene ID: Rep_461_c_1_30
Type: CAZyme
Location: 37041 - 38348 (-)
Gene ID: Rep_461_c_1_31
Type: CAZyme
Location: 38362 - 40398 (-)
Gene ID: Rep_461_c_1_32
Type:
Location: 40487 - 41062 (-)
Gene ID: Rep_461_c_1_33
Type: pfam
Location: 41075 - 42763 (-)
Gene ID: Rep_461_c_1_34
Type: TC
Location: 42780 - 45899 (-)
Gene ID: Rep_461_c_1_35
Type: CAZyme
Location: 45945 - 48446 (-)
Gene ID: Rep_461_c_1_36
Type: CAZyme
Location: 48499 - 51054 (-)
Gene ID: Rep_461_c_1_37
Type: TF
Location: 51291 - 55343 (-)
Gene ID: Rep_461_c_1_38
Type: TC
Location: 55849 - 58059 (+)
Gene ID: Rep_461_c_1_39
Type: TC
Location: 58133 - 60136 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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