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Cluster: Rep_460_CGC94

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_54 Rep_460_c_54_1 80 2383 - GH3
TC Rep_460_c_54 Rep_460_c_54_2 2403 3923 - 8.A.46.1.3
TC Rep_460_c_54 Rep_460_c_54_3 4187 7225 - 1.B.14.6.1
pfam Rep_460_c_54 Rep_460_c_54_4 7956 8888 - HHH_3 | HHH_3 | HHH_3
TC Rep_460_c_54 Rep_460_c_54_5 8893 10263 - 2.A.22.5.3
pfam Rep_460_c_54 Rep_460_c_54_6 10369 10761 + VanZ
pfam Rep_460_c_54 Rep_460_c_54_7 10777 12075 - Mur_ligase | Mur_ligase_C | Mur_ligase_M
TC Rep_460_c_54 Rep_460_c_54_8 12175 14196 - 2.A.21.9.2
Gene ID: Rep_460_c_54_1
Type: CAZyme
Location: 80 - 2383 (-)
Gene ID: Rep_460_c_54_2
Type: TC
Location: 2403 - 3923 (-)
Gene ID: Rep_460_c_54_3
Type: TC
Location: 4187 - 7225 (-)
Gene ID: Rep_460_c_54_4
Type: pfam
Location: 7956 - 8888 (-)
Gene ID: Rep_460_c_54_5
Type: TC
Location: 8893 - 10263 (-)
Gene ID: Rep_460_c_54_6
Type: pfam
Location: 10369 - 10761 (+)
Gene ID: Rep_460_c_54_7
Type: pfam
Location: 10777 - 12075 (-)
Gene ID: Rep_460_c_54_8
Type: TC
Location: 12175 - 14196 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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