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Cluster: Rep_460_CGC93

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_460_c_50 Rep_460_c_50_15 17903 18697 - 9.B.116.3.2
NULL(UNKNOWN) Rep_460_c_50 Rep_460_c_50_16 18930 19292 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_460_c_50 Rep_460_c_50_17 19397 22489 - GH2
CAZyme Rep_460_c_50 Rep_460_c_50_18 22492 23979 - GH28
sulfatase Rep_460_c_50 Rep_460_c_50_19 23992 25851 - S1_24
CAZyme Rep_460_c_50 Rep_460_c_50_20 25860 27320 - GH28
CAZyme Rep_460_c_50 Rep_460_c_50_21 27327 29540 - GH92
CAZyme Rep_460_c_50 Rep_460_c_50_22 29546 31618 - GH92
pfam Rep_460_c_50 Rep_460_c_50_23 31695 33245 - SusD_RagB | SusD-like_3
TC Rep_460_c_50 Rep_460_c_50_24 33270 36620 - 1.B.14.6.1
Gene ID: Rep_460_c_50_15
Type: TC
Location: 17903 - 18697 (-)
Gene ID: Rep_460_c_50_16
Type:
Location: 18930 - 19292 (+)
Gene ID: Rep_460_c_50_17
Type: CAZyme
Location: 19397 - 22489 (-)
Gene ID: Rep_460_c_50_18
Type: CAZyme
Location: 22492 - 23979 (-)
Gene ID: Rep_460_c_50_19
Type: sulfatase
Location: 23992 - 25851 (-)
Gene ID: Rep_460_c_50_20
Type: CAZyme
Location: 25860 - 27320 (-)
Gene ID: Rep_460_c_50_21
Type: CAZyme
Location: 27327 - 29540 (-)
Gene ID: Rep_460_c_50_22
Type: CAZyme
Location: 29546 - 31618 (-)
Gene ID: Rep_460_c_50_23
Type: pfam
Location: 31695 - 33245 (-)
Gene ID: Rep_460_c_50_24
Type: TC
Location: 33270 - 36620 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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