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Cluster: Rep_460_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_0 Rep_460_c_0_135 201184 203457 - GH92
CAZyme Rep_460_c_0 Rep_460_c_0_136 203483 205495 - GH97
CAZyme Rep_460_c_0 Rep_460_c_0_137 205572 207539 - GH18
pfam Rep_460_c_0 Rep_460_c_0_138 207566 208711 - Pentaxin | BT_3987-like_N | Laminin_G_3
pfam Rep_460_c_0 Rep_460_c_0_139 208724 209737 - GH18_BT1044-like
TC Rep_460_c_0 Rep_460_c_0_140 209763 211385 - 8.A.46.2.2
TC Rep_460_c_0 Rep_460_c_0_141 211399 214728 - 1.B.14.6.13
CAZyme Rep_460_c_0 Rep_460_c_0_142 214920 217199 - GH92
STP Rep_460_c_0 Rep_460_c_0_143 217258 218262 - FecR
TF Rep_460_c_0 Rep_460_c_0_144 218294 218854 - GerE
CAZyme Rep_460_c_0 Rep_460_c_0_145 218864 221092 - GH92
Gene ID: Rep_460_c_0_135
Type: CAZyme
Location: 201184 - 203457 (-)
Gene ID: Rep_460_c_0_136
Type: CAZyme
Location: 203483 - 205495 (-)
Gene ID: Rep_460_c_0_137
Type: CAZyme
Location: 205572 - 207539 (-)
Gene ID: Rep_460_c_0_138
Type: pfam
Location: 207566 - 208711 (-)
Gene ID: Rep_460_c_0_139
Type: pfam
Location: 208724 - 209737 (-)
Gene ID: Rep_460_c_0_140
Type: TC
Location: 209763 - 211385 (-)
Gene ID: Rep_460_c_0_141
Type: TC
Location: 211399 - 214728 (-)
Gene ID: Rep_460_c_0_142
Type: CAZyme
Location: 214920 - 217199 (-)
Gene ID: Rep_460_c_0_143
Type: STP
Location: 217258 - 218262 (-)
Gene ID: Rep_460_c_0_144
Type: TF
Location: 218294 - 218854 (-)
Gene ID: Rep_460_c_0_145
Type: CAZyme
Location: 218864 - 221092 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_0_144 vegan > omnivore 1.24632 0.00582

🧭 Explore Read Mapping of CGC

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