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Cluster: Rep_460_CGC89

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_42 Rep_460_c_42_18 25127 28168 - PL29
CAZyme Rep_460_c_42 Rep_460_c_42_19 28198 29880 - PL1_2
TF Rep_460_c_42 Rep_460_c_42_20 29939 34318 - HTH_AraC
CAZyme Rep_460_c_42 Rep_460_c_42_21 34427 37057 - GH2
CAZyme Rep_460_c_42 Rep_460_c_42_22 37075 39387 - GH139
CAZyme Rep_460_c_42 Rep_460_c_42_23 39398 40831 - CE20
CAZyme Rep_460_c_42 Rep_460_c_42_24 40844 44116 - GH106
STP Rep_460_c_42 Rep_460_c_42_25 44862 47282 + GAF | HATPase_c | HisKA
TC Rep_460_c_42 Rep_460_c_42_26 47333 48535 + 2.A.1.35.1
Gene ID: Rep_460_c_42_18
Type: CAZyme
Location: 25127 - 28168 (-)
Gene ID: Rep_460_c_42_19
Type: CAZyme
Location: 28198 - 29880 (-)
Gene ID: Rep_460_c_42_20
Type: TF
Location: 29939 - 34318 (-)
Gene ID: Rep_460_c_42_21
Type: CAZyme
Location: 34427 - 37057 (-)
Gene ID: Rep_460_c_42_22
Type: CAZyme
Location: 37075 - 39387 (-)
Gene ID: Rep_460_c_42_23
Type: CAZyme
Location: 39398 - 40831 (-)
Gene ID: Rep_460_c_42_24
Type: CAZyme
Location: 40844 - 44116 (-)
Gene ID: Rep_460_c_42_25
Type: STP
Location: 44862 - 47282 (+)
Gene ID: Rep_460_c_42_26
Type: TC
Location: 47333 - 48535 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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