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Cluster: Rep_460_CGC82

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_460_c_36 Rep_460_c_36_27 38408 40114 + 3.A.3.7.2
TC Rep_460_c_36 Rep_460_c_36_28 40134 42182 + 3.A.3.7.2
TC Rep_460_c_36 Rep_460_c_36_29 42255 42833 + 3.A.3.7.2
NULL(UNKNOWN) Rep_460_c_36 Rep_460_c_36_30 43150 43899 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_460_c_36 Rep_460_c_36_31 44124 45248 + KdpD
TC Rep_460_c_36 Rep_460_c_36_32 45270 46709 + 2.A.21.9.1
peptidase Rep_460_c_36 Rep_460_c_36_33 46801 49041 - S09.UPB
CAZyme Rep_460_c_36 Rep_460_c_36_34 49146 51551 - GH127
CAZyme Rep_460_c_36 Rep_460_c_36_35 51574 53976 - CBM32 | GH43_34
Gene ID: Rep_460_c_36_27
Type: TC
Location: 38408 - 40114 (+)
Gene ID: Rep_460_c_36_28
Type: TC
Location: 40134 - 42182 (+)
Gene ID: Rep_460_c_36_29
Type: TC
Location: 42255 - 42833 (+)
Gene ID: Rep_460_c_36_30
Type:
Location: 43150 - 43899 (+)
Gene ID: Rep_460_c_36_31
Type: pfam
Location: 44124 - 45248 (+)
Gene ID: Rep_460_c_36_32
Type: TC
Location: 45270 - 46709 (+)
Gene ID: Rep_460_c_36_33
Type: peptidase
Location: 46801 - 49041 (-)
Gene ID: Rep_460_c_36_34
Type: CAZyme
Location: 49146 - 51551 (-)
Gene ID: Rep_460_c_36_35
Type: CAZyme
Location: 51574 - 53976 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_36_29 vegan > omnivore 1.19296 0.00582
Rep_460_c_36_29 vegetarian > omnivore 1.20518 0.00207
Rep_460_c_36_30 vegan > omnivore 1.34319 0.00582
Rep_460_c_36_30 vegetarian > omnivore 2.48742 0.00207
Rep_460_c_36_30 vegetarian > vegan 1.14423 0.03257
Rep_460_c_36_34 vegetarian > omnivore 1.56829 0.00207

🧭 Explore Read Mapping of CGC

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