dbCAN HGM

Cluster: Rep_460_CGC80

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_460_c_36	Rep_460_c_36_6	9116	10123	-	8.A.5.1.3
CAZyme	Rep_460_c_36	Rep_460_c_36_7	10437	12716	+	GH3
TF	Rep_460_c_36	Rep_460_c_36_8	12898	13785	+	HTH_AraC \| HTH_AraC
CAZyme	Rep_460_c_36	Rep_460_c_36_9	13880	15142	+	CE7
CAZyme	Rep_460_c_36	Rep_460_c_36_10	15157	16443	+	GH5_7
CAZyme	Rep_460_c_36	Rep_460_c_36_11	16445	17425	+	GH5_2
TC	Rep_460_c_36	Rep_460_c_36_12	17646	20849	+	1.B.14.6.1

Gene ID: Rep_460_c_36_6
Type: TC
Location: 9116 - 10123 (-)

Gene ID: Rep_460_c_36_7
Type: CAZyme
Location: 10437 - 12716 (+)

Gene ID: Rep_460_c_36_8
Type: TF
Location: 12898 - 13785 (+)

Gene ID: Rep_460_c_36_9
Type: CAZyme
Location: 13880 - 15142 (+)

Gene ID: Rep_460_c_36_10
Type: CAZyme
Location: 15157 - 16443 (+)

Gene ID: Rep_460_c_36_11
Type: CAZyme
Location: 16445 - 17425 (+)

Gene ID: Rep_460_c_36_12
Type: TC
Location: 17646 - 20849 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_460_c_36_7	vegan > omnivore	1.87411	0.00582
Rep_460_c_36_7	vegetarian > omnivore	1.74570	0.00207
Rep_460_c_36_9	vegan > omnivore	1.08350	0.00582
Rep_460_c_36_9	vegetarian > omnivore	1.04161	0.00207
Rep_460_c_36_12	vegetarian > omnivore	1.08841	0.00207

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_460_c_36_7	vegan > omnivore	1.13717	0.00035