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Cluster: Rep_460_CGC78

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_30 Rep_460_c_30_22 25337 26941 + GH28
CAZyme Rep_460_c_30 Rep_460_c_30_23 26968 30789 + CBM67 | GH33 | GH78
pfam Rep_460_c_30 Rep_460_c_30_24 30884 32104 + DUF4861
CAZyme Rep_460_c_30 Rep_460_c_30_25 32199 33878 + CBM91 | GH43_10
pfam Rep_460_c_30 Rep_460_c_30_26 34270 34923 + Hydrolase | HAD | Hydrolase_like | HAD_2
CAZyme Rep_460_c_30 Rep_460_c_30_27 35047 37527 + GH95
TC Rep_460_c_30 Rep_460_c_30_28 37811 41032 + 1.B.14.6.1
pfam Rep_460_c_30 Rep_460_c_30_29 41054 42958 + SusD_RagB | SusD-like_3
pfam Rep_460_c_30 Rep_460_c_30_30 42981 44624 + DUF5123
CAZyme Rep_460_c_30 Rep_460_c_30_31 44861 46270 + GH140
TC Rep_460_c_30 Rep_460_c_30_32 46552 49833 + 1.B.14.6.1
Gene ID: Rep_460_c_30_22
Type: CAZyme
Location: 25337 - 26941 (+)
Gene ID: Rep_460_c_30_23
Type: CAZyme
Location: 26968 - 30789 (+)
Gene ID: Rep_460_c_30_24
Type: pfam
Location: 30884 - 32104 (+)
Gene ID: Rep_460_c_30_25
Type: CAZyme
Location: 32199 - 33878 (+)
Gene ID: Rep_460_c_30_26
Type: pfam
Location: 34270 - 34923 (+)
Gene ID: Rep_460_c_30_27
Type: CAZyme
Location: 35047 - 37527 (+)
Gene ID: Rep_460_c_30_28
Type: TC
Location: 37811 - 41032 (+)
Gene ID: Rep_460_c_30_29
Type: pfam
Location: 41054 - 42958 (+)
Gene ID: Rep_460_c_30_30
Type: pfam
Location: 42981 - 44624 (+)
Gene ID: Rep_460_c_30_31
Type: CAZyme
Location: 44861 - 46270 (+)
Gene ID: Rep_460_c_30_32
Type: TC
Location: 46552 - 49833 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_30_24 vegan > omnivore 1.42277 0.00582
Rep_460_c_30_24 vegetarian > omnivore 1.89678 0.00207

🧭 Explore Read Mapping of CGC

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