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Cluster: Rep_460_CGC62

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_19 Rep_460_c_19_49 80125 81120 - GH16_3
CAZyme Rep_460_c_19 Rep_460_c_19_50 81125 82996 - GH29
CAZyme Rep_460_c_19 Rep_460_c_19_51 83138 86224 - GH2
CAZyme Rep_460_c_19 Rep_460_c_19_52 86293 88608 - GH20
sulfatase Rep_460_c_19 Rep_460_c_19_53 88648 90231 - S1_11
pfam Rep_460_c_19 Rep_460_c_19_54 90372 92177 - SusD_RagB | SusD-like_2 | SusD-like_3
TC Rep_460_c_19 Rep_460_c_19_55 92190 95372 - 1.B.14.6.1
Gene ID: Rep_460_c_19_49
Type: CAZyme
Location: 80125 - 81120 (-)
Gene ID: Rep_460_c_19_50
Type: CAZyme
Location: 81125 - 82996 (-)
Gene ID: Rep_460_c_19_51
Type: CAZyme
Location: 83138 - 86224 (-)
Gene ID: Rep_460_c_19_52
Type: CAZyme
Location: 86293 - 88608 (-)
Gene ID: Rep_460_c_19_53
Type: sulfatase
Location: 88648 - 90231 (-)
Gene ID: Rep_460_c_19_54
Type: pfam
Location: 90372 - 92177 (-)
Gene ID: Rep_460_c_19_55
Type: TC
Location: 92190 - 95372 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_19_50 vegan > omnivore 1.02089 0.00582
Rep_460_c_19_50 vegetarian > omnivore 2.18292 0.00207
Rep_460_c_19_50 vegetarian > vegan 1.16203 0.02180

🧭 Explore Read Mapping of CGC

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