dbCAN Logo

Cluster: Rep_460_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_19 Rep_460_c_19_22 34611 36089 + GH28
CAZyme Rep_460_c_19 Rep_460_c_19_23 36554 39142 - GH3
pfam Rep_460_c_19 Rep_460_c_19_24 39270 41294 - SusD_RagB | SusD-like_3
TC Rep_460_c_19 Rep_460_c_19_25 41317 44640 - 1.B.14.6.1
TF Rep_460_c_19 Rep_460_c_19_26 44877 49235 + HTH_AraC
CAZyme Rep_460_c_19 Rep_460_c_19_27 49229 51247 - CBM91 | GH43_10
TC Rep_460_c_19 Rep_460_c_19_28 51423 53273 - 4.C.1.1.14
Gene ID: Rep_460_c_19_22
Type: CAZyme
Location: 34611 - 36089 (+)
Gene ID: Rep_460_c_19_23
Type: CAZyme
Location: 36554 - 39142 (-)
Gene ID: Rep_460_c_19_24
Type: pfam
Location: 39270 - 41294 (-)
Gene ID: Rep_460_c_19_25
Type: TC
Location: 41317 - 44640 (-)
Gene ID: Rep_460_c_19_26
Type: TF
Location: 44877 - 49235 (+)
Gene ID: Rep_460_c_19_27
Type: CAZyme
Location: 49229 - 51247 (-)
Gene ID: Rep_460_c_19_28
Type: TC
Location: 51423 - 53273 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_19_24 vegan > omnivore 3.31053 0.00582
Rep_460_c_19_24 vegetarian > omnivore 1.89264 0.00207
Rep_460_c_19_27 vegan > omnivore 2.44861 0.00582
Rep_460_c_19_27 vegetarian > omnivore 1.11376 0.00207

🧭 Explore Read Mapping of CGC

← Back to Cluster List