Cluster: Rep_460_CGC60
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00079
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_460_c_19 | Rep_460_c_19_2 | 259 | 1662 | + | GH144 |
| TC | Rep_460_c_19 | Rep_460_c_19_3 | 2029 | 5097 | + | 1.B.14.6.1 |
| TC | Rep_460_c_19 | Rep_460_c_19_4 | 5126 | 6592 | + | 8.A.46.1.3 |
| CAZyme | Rep_460_c_19 | Rep_460_c_19_5 | 6792 | 9122 | + | GH3 |
| pfam | Rep_460_c_19 | Rep_460_c_19_6 | 9147 | 10007 | + | Exo_endo_phos |
| CAZyme | Rep_460_c_19 | Rep_460_c_19_7 | 10016 | 11335 | + | GH144 |
Gene ID: Rep_460_c_19_2
Type: CAZyme
Location: 259 - 1662 (+)
Type: CAZyme
Location: 259 - 1662 (+)
Gene ID: Rep_460_c_19_3
Type: TC
Location: 2029 - 5097 (+)
Type: TC
Location: 2029 - 5097 (+)
Gene ID: Rep_460_c_19_4
Type: TC
Location: 5126 - 6592 (+)
Type: TC
Location: 5126 - 6592 (+)
Gene ID: Rep_460_c_19_5
Type: CAZyme
Location: 6792 - 9122 (+)
Type: CAZyme
Location: 6792 - 9122 (+)
Gene ID: Rep_460_c_19_6
Type: pfam
Location: 9147 - 10007 (+)
Type: pfam
Location: 9147 - 10007 (+)
Gene ID: Rep_460_c_19_7
Type: CAZyme
Location: 10016 - 11335 (+)
Type: CAZyme
Location: 10016 - 11335 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_19_3 | vegan > omnivore | 1.24065 | 0.00286 |