Cluster: Rep_460_CGC6
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 9
- Substrate: xylan
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_01235
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_0 | Rep_460_c_0_74 | 97722 | 98366 | + | 3.A.1.12.5 |
| NULL(UNKNOWN) | Rep_460_c_0 | Rep_460_c_0_75 | 98424 | 99629 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_460_c_0 | Rep_460_c_0_76 | 99671 | 103765 | - | HTH_AraC |
| TC | Rep_460_c_0 | Rep_460_c_0_77 | 104210 | 107356 | + | 1.B.14.6.1 |
| pfam | Rep_460_c_0 | Rep_460_c_0_78 | 107376 | 109076 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_460_c_0 | Rep_460_c_0_79 | 109095 | 110471 | + | SGBP_B_XBD |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_80 | 110518 | 112896 | + | GH10 |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_81 | 113140 | 114846 | + | GH35 |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_82 | 114884 | 116572 | + | CE20 | CE20 |
| TC | Rep_460_c_0 | Rep_460_c_0_83 | 116589 | 118085 | + | 2.A.2.3.4 |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_84 | 118103 | 119293 | + | GH10 |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_85 | 119312 | 120289 | + | GH43_1 |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_86 | 120301 | 122340 | + | GH67 |
| TF | Rep_460_c_0 | Rep_460_c_0_87 | 122544 | 126641 | + | HTH_AraC |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_88 | 126722 | 129952 | - | CE6 | GH95 |
| pfam | Rep_460_c_0 | Rep_460_c_0_89 | 130096 | 130266 | - | Glyco_hydro_10 |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_90 | 130288 | 132252 | - | GH5_21 |
| CAZyme | Rep_460_c_0 | Rep_460_c_0_91 | 132507 | 134705 | - | GH10 |
Gene ID: Rep_460_c_0_74
Type: TC
Location: 97722 - 98366 (+)
Type: TC
Location: 97722 - 98366 (+)
Gene ID: Rep_460_c_0_75
Type:
Location: 98424 - 99629 (+)
Type:
Location: 98424 - 99629 (+)
Gene ID: Rep_460_c_0_76
Type: TF
Location: 99671 - 103765 (-)
Type: TF
Location: 99671 - 103765 (-)
Gene ID: Rep_460_c_0_77
Type: TC
Location: 104210 - 107356 (+)
Type: TC
Location: 104210 - 107356 (+)
Gene ID: Rep_460_c_0_78
Type: pfam
Location: 107376 - 109076 (+)
Type: pfam
Location: 107376 - 109076 (+)
Gene ID: Rep_460_c_0_79
Type: pfam
Location: 109095 - 110471 (+)
Type: pfam
Location: 109095 - 110471 (+)
Gene ID: Rep_460_c_0_80
Type: CAZyme
Location: 110518 - 112896 (+)
Type: CAZyme
Location: 110518 - 112896 (+)
Gene ID: Rep_460_c_0_81
Type: CAZyme
Location: 113140 - 114846 (+)
Type: CAZyme
Location: 113140 - 114846 (+)
Gene ID: Rep_460_c_0_82
Type: CAZyme
Location: 114884 - 116572 (+)
Type: CAZyme
Location: 114884 - 116572 (+)
Gene ID: Rep_460_c_0_83
Type: TC
Location: 116589 - 118085 (+)
Type: TC
Location: 116589 - 118085 (+)
Gene ID: Rep_460_c_0_84
Type: CAZyme
Location: 118103 - 119293 (+)
Type: CAZyme
Location: 118103 - 119293 (+)
Gene ID: Rep_460_c_0_85
Type: CAZyme
Location: 119312 - 120289 (+)
Type: CAZyme
Location: 119312 - 120289 (+)
Gene ID: Rep_460_c_0_86
Type: CAZyme
Location: 120301 - 122340 (+)
Type: CAZyme
Location: 120301 - 122340 (+)
Gene ID: Rep_460_c_0_87
Type: TF
Location: 122544 - 126641 (+)
Type: TF
Location: 122544 - 126641 (+)
Gene ID: Rep_460_c_0_88
Type: CAZyme
Location: 126722 - 129952 (-)
Type: CAZyme
Location: 126722 - 129952 (-)
Gene ID: Rep_460_c_0_89
Type: pfam
Location: 130096 - 130266 (-)
Type: pfam
Location: 130096 - 130266 (-)
Gene ID: Rep_460_c_0_90
Type: CAZyme
Location: 130288 - 132252 (-)
Type: CAZyme
Location: 130288 - 132252 (-)
Gene ID: Rep_460_c_0_91
Type: CAZyme
Location: 132507 - 134705 (-)
Type: CAZyme
Location: 132507 - 134705 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_0_85 | vegetarian > omnivore | 1.42979 | 0.00207 |
| Rep_460_c_0_86 | vegetarian > omnivore | 1.11870 | 0.00207 |