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Cluster: Rep_460_CGC56

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_460_c_16 Rep_460_c_16_83 110458 112299 - 3.A.1.106.1
NULL(UNKNOWN) Rep_460_c_16 Rep_460_c_16_84 113131 113751 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_460_c_16 Rep_460_c_16_85 113788 114927 + GT4
CAZyme Rep_460_c_16 Rep_460_c_16_86 114924 116036 + GT4
CAZyme Rep_460_c_16 Rep_460_c_16_87 116029 116841 - GT2
CAZyme Rep_460_c_16 Rep_460_c_16_88 116871 118010 - GT4
CAZyme Rep_460_c_16 Rep_460_c_16_89 118049 119050 - GT2
pfam Rep_460_c_16 Rep_460_c_16_90 119043 120146 - Glyco_tran_WbsX
CAZyme Rep_460_c_16 Rep_460_c_16_91 120139 121149 - GT2
CAZyme Rep_460_c_16 Rep_460_c_16_92 121223 122107 - GT14
Gene ID: Rep_460_c_16_83
Type: TC
Location: 110458 - 112299 (-)
Gene ID: Rep_460_c_16_84
Type:
Location: 113131 - 113751 (+)
Gene ID: Rep_460_c_16_85
Type: CAZyme
Location: 113788 - 114927 (+)
Gene ID: Rep_460_c_16_86
Type: CAZyme
Location: 114924 - 116036 (+)
Gene ID: Rep_460_c_16_87
Type: CAZyme
Location: 116029 - 116841 (-)
Gene ID: Rep_460_c_16_88
Type: CAZyme
Location: 116871 - 118010 (-)
Gene ID: Rep_460_c_16_89
Type: CAZyme
Location: 118049 - 119050 (-)
Gene ID: Rep_460_c_16_90
Type: pfam
Location: 119043 - 120146 (-)
Gene ID: Rep_460_c_16_91
Type: CAZyme
Location: 120139 - 121149 (-)
Gene ID: Rep_460_c_16_92
Type: CAZyme
Location: 121223 - 122107 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_16_83 vegetarian > omnivore 1.54967 0.00207

🧭 Explore Read Mapping of CGC

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