Cluster: Rep_460_CGC55
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate: alpha-glucan
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00175
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_16 | Rep_460_c_16_65 | 85369 | 86250 | - | 1.B.48.2.5 |
| peptidase | Rep_460_c_16 | Rep_460_c_16_66 | 86463 | 87266 | - | M95.UPW |
| pfam | Rep_460_c_16 | Rep_460_c_16_67 | 87463 | 88326 | + | DUF2807 | DUF2807 | DUF4097 |
| CAZyme | Rep_460_c_16 | Rep_460_c_16_68 | 88966 | 91110 | - | GH97 |
| CAZyme | Rep_460_c_16 | Rep_460_c_16_69 | 91213 | 92538 | - | GH13 |
| CAZyme | Rep_460_c_16 | Rep_460_c_16_70 | 92540 | 93883 | - | GH13 |
| pfam | Rep_460_c_16 | Rep_460_c_16_71 | 93981 | 95657 | - | CBM26 |
| pfam | Rep_460_c_16 | Rep_460_c_16_72 | 95676 | 97472 | - | SusD_RagB |
| TC | Rep_460_c_16 | Rep_460_c_16_73 | 97508 | 100486 | - | 1.B.14.6.1 |
Gene ID: Rep_460_c_16_65
Type: TC
Location: 85369 - 86250 (-)
Type: TC
Location: 85369 - 86250 (-)
Gene ID: Rep_460_c_16_66
Type: peptidase
Location: 86463 - 87266 (-)
Type: peptidase
Location: 86463 - 87266 (-)
Gene ID: Rep_460_c_16_67
Type: pfam
Location: 87463 - 88326 (+)
Type: pfam
Location: 87463 - 88326 (+)
Gene ID: Rep_460_c_16_68
Type: CAZyme
Location: 88966 - 91110 (-)
Type: CAZyme
Location: 88966 - 91110 (-)
Gene ID: Rep_460_c_16_69
Type: CAZyme
Location: 91213 - 92538 (-)
Type: CAZyme
Location: 91213 - 92538 (-)
Gene ID: Rep_460_c_16_70
Type: CAZyme
Location: 92540 - 93883 (-)
Type: CAZyme
Location: 92540 - 93883 (-)
Gene ID: Rep_460_c_16_71
Type: pfam
Location: 93981 - 95657 (-)
Type: pfam
Location: 93981 - 95657 (-)
Gene ID: Rep_460_c_16_72
Type: pfam
Location: 95676 - 97472 (-)
Type: pfam
Location: 95676 - 97472 (-)
Gene ID: Rep_460_c_16_73
Type: TC
Location: 97508 - 100486 (-)
Type: TC
Location: 97508 - 100486 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_16_65 | vegan > omnivore | 1.59922 | 0.00582 |
| Rep_460_c_16_67 | vegan > omnivore | 2.21548 | 0.00286 |
| Rep_460_c_16_67 | vegetarian > omnivore | 1.66380 | 0.00207 |
| Rep_460_c_16_68 | vegetarian > omnivore | 1.50359 | 0.00207 |
| Rep_460_c_16_68 | vegan > omnivore | 1.00532 | 0.00582 |
| Rep_460_c_16_69 | vegan > omnivore | 2.37704 | 0.00582 |
| Rep_460_c_16_69 | vegetarian > omnivore | 3.09430 | 0.00207 |
| Rep_460_c_16_70 | vegan > omnivore | 2.22819 | 0.00582 |
| Rep_460_c_16_70 | vegetarian > omnivore | 2.92623 | 0.00207 |
| Rep_460_c_16_71 | vegan > omnivore | 2.27836 | 0.00582 |
| Rep_460_c_16_71 | vegetarian > omnivore | 2.93524 | 0.00207 |
| Rep_460_c_16_72 | vegan > omnivore | 2.39790 | 0.00582 |
| Rep_460_c_16_72 | vegetarian > omnivore | 2.88149 | 0.00207 |
| Rep_460_c_16_73 | vegan > omnivore | 2.11559 | 0.00582 |
| Rep_460_c_16_73 | vegetarian > omnivore | 2.65296 | 0.00207 |