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Cluster: Rep_460_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_460_c_16 Rep_460_c_16_34 41003 44128 + 1.B.14.6.1
TC Rep_460_c_16 Rep_460_c_16_35 44152 45672 + 8.A.46.1.3
TC Rep_460_c_16 Rep_460_c_16_36 45669 46064 + 2.A.124.1.2
TC Rep_460_c_16 Rep_460_c_16_37 46061 46666 + 2.A.124.1.2
CAZyme Rep_460_c_16 Rep_460_c_16_38 46688 49840 + GH2
CAZyme Rep_460_c_16 Rep_460_c_16_39 49867 51795 + GH63
CAZyme Rep_460_c_16 Rep_460_c_16_40 52032 54347 + PL21_1
TC Rep_460_c_16 Rep_460_c_16_41 54439 56643 - 3.A.10.1.10
Gene ID: Rep_460_c_16_34
Type: TC
Location: 41003 - 44128 (+)
Gene ID: Rep_460_c_16_35
Type: TC
Location: 44152 - 45672 (+)
Gene ID: Rep_460_c_16_36
Type: TC
Location: 45669 - 46064 (+)
Gene ID: Rep_460_c_16_37
Type: TC
Location: 46061 - 46666 (+)
Gene ID: Rep_460_c_16_38
Type: CAZyme
Location: 46688 - 49840 (+)
Gene ID: Rep_460_c_16_39
Type: CAZyme
Location: 49867 - 51795 (+)
Gene ID: Rep_460_c_16_40
Type: CAZyme
Location: 52032 - 54347 (+)
Gene ID: Rep_460_c_16_41
Type: TC
Location: 54439 - 56643 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_16_34 vegetarian > vegan 1.98066 0.00277
Rep_460_c_16_35 vegetarian > vegan 2.70728 0.00189
Rep_460_c_16_37 vegan > omnivore 1.77368 0.00286

🧭 Explore Read Mapping of CGC

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