Cluster: Rep_460_CGC46
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_460
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_460_c_11 | Rep_460_c_11_68 | 82862 | 84814 | + | GH43_19 | GH43_29 |
| TC | Rep_460_c_11 | Rep_460_c_11_69 | 85232 | 88384 | + | 1.B.14.6.1 |
| pfam | Rep_460_c_11 | Rep_460_c_11_70 | 88447 | 90261 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_460_c_11 | Rep_460_c_11_71 | 90273 | 90974 | + | DUF3823 | DUF3823_C |
| CAZyme | Rep_460_c_11 | Rep_460_c_11_72 | 91023 | 93419 | + | GH31_4 |
| CAZyme | Rep_460_c_11 | Rep_460_c_11_73 | 93536 | 96286 | - | GH2 |
| CAZyme | Rep_460_c_11 | Rep_460_c_11_74 | 96332 | 98242 | - | PL17 |
| CAZyme | Rep_460_c_11 | Rep_460_c_11_75 | 98239 | 100014 | - | GH105 |
| NULL(UNKNOWN) | Rep_460_c_11 | Rep_460_c_11_76 | 100047 | 100190 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_460_c_11 | Rep_460_c_11_77 | 100229 | 101851 | - | GH30_4 |
| TC | Rep_460_c_11 | Rep_460_c_11_78 | 101887 | 103512 | - | 8.A.46.1.5 |
| TC | Rep_460_c_11 | Rep_460_c_11_79 | 103526 | 106558 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_460_c_11 | Rep_460_c_11_80 | 106569 | 107864 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_460_c_11 | Rep_460_c_11_81 | 108010 | 111333 | - | TPR_8 | TPR_12 | TPR_16 | DUF5107 |
| TC | Rep_460_c_11 | Rep_460_c_11_82 | 111432 | 112817 | - | 2.A.1.1.3 |
| NULL(UNKNOWN) | Rep_460_c_11 | Rep_460_c_11_83 | 112842 | 112967 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_460_c_11 | Rep_460_c_11_84 | 113001 | 113879 | + | HTH_AraC | HTH_AraC |
| TC | Rep_460_c_11 | Rep_460_c_11_85 | 114268 | 116775 | - | 9.B.144.1.4 |
Gene ID: Rep_460_c_11_68
Type: CAZyme
Location: 82862 - 84814 (+)
Type: CAZyme
Location: 82862 - 84814 (+)
Gene ID: Rep_460_c_11_69
Type: TC
Location: 85232 - 88384 (+)
Type: TC
Location: 85232 - 88384 (+)
Gene ID: Rep_460_c_11_70
Type: pfam
Location: 88447 - 90261 (+)
Type: pfam
Location: 88447 - 90261 (+)
Gene ID: Rep_460_c_11_71
Type: pfam
Location: 90273 - 90974 (+)
Type: pfam
Location: 90273 - 90974 (+)
Gene ID: Rep_460_c_11_72
Type: CAZyme
Location: 91023 - 93419 (+)
Type: CAZyme
Location: 91023 - 93419 (+)
Gene ID: Rep_460_c_11_73
Type: CAZyme
Location: 93536 - 96286 (-)
Type: CAZyme
Location: 93536 - 96286 (-)
Gene ID: Rep_460_c_11_74
Type: CAZyme
Location: 96332 - 98242 (-)
Type: CAZyme
Location: 96332 - 98242 (-)
Gene ID: Rep_460_c_11_75
Type: CAZyme
Location: 98239 - 100014 (-)
Type: CAZyme
Location: 98239 - 100014 (-)
Gene ID: Rep_460_c_11_76
Type:
Location: 100047 - 100190 (+)
Type:
Location: 100047 - 100190 (+)
Gene ID: Rep_460_c_11_77
Type: CAZyme
Location: 100229 - 101851 (-)
Type: CAZyme
Location: 100229 - 101851 (-)
Gene ID: Rep_460_c_11_78
Type: TC
Location: 101887 - 103512 (-)
Type: TC
Location: 101887 - 103512 (-)
Gene ID: Rep_460_c_11_79
Type: TC
Location: 103526 - 106558 (-)
Type: TC
Location: 103526 - 106558 (-)
Gene ID: Rep_460_c_11_80
Type:
Location: 106569 - 107864 (-)
Type:
Location: 106569 - 107864 (-)
Gene ID: Rep_460_c_11_81
Type: pfam
Location: 108010 - 111333 (-)
Type: pfam
Location: 108010 - 111333 (-)
Gene ID: Rep_460_c_11_82
Type: TC
Location: 111432 - 112817 (-)
Type: TC
Location: 111432 - 112817 (-)
Gene ID: Rep_460_c_11_83
Type:
Location: 112842 - 112967 (+)
Type:
Location: 112842 - 112967 (+)
Gene ID: Rep_460_c_11_84
Type: TF
Location: 113001 - 113879 (+)
Type: TF
Location: 113001 - 113879 (+)
Gene ID: Rep_460_c_11_85
Type: TC
Location: 114268 - 116775 (-)
Type: TC
Location: 114268 - 116775 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_11_70 | vegetarian > omnivore | 4.81725 | 0.00207 |
| Rep_460_c_11_70 | vegan > omnivore | 4.74410 | 0.00582 |
| Rep_460_c_11_71 | vegan > omnivore | 4.16350 | 0.00582 |
| Rep_460_c_11_71 | vegetarian > omnivore | 4.25992 | 0.00207 |