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Cluster: Rep_460_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_11 Rep_460_c_11_5 2950 3813 + GT2
pfam Rep_460_c_11 Rep_460_c_11_6 3839 4336 + Hydrolase | Hydrolase_3
CAZyme Rep_460_c_11 Rep_460_c_11_7 4381 5436 - GT2
pfam Rep_460_c_11 Rep_460_c_11_8 5433 6878 - Polysacc_synt | Polysacc_synt_3
pfam Rep_460_c_11 Rep_460_c_11_9 7002 9041 - tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | Anticodon_3
TC Rep_460_c_11 Rep_460_c_11_10 9183 10235 - 1.C.39.13.3
NULL(UNKNOWN) Rep_460_c_11 Rep_460_c_11_11 10239 10391 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_460_c_11 Rep_460_c_11_12 10453 11994 - 1.C.39.13.3
Gene ID: Rep_460_c_11_5
Type: CAZyme
Location: 2950 - 3813 (+)
Gene ID: Rep_460_c_11_6
Type: pfam
Location: 3839 - 4336 (+)
Gene ID: Rep_460_c_11_7
Type: CAZyme
Location: 4381 - 5436 (-)
Gene ID: Rep_460_c_11_8
Type: pfam
Location: 5433 - 6878 (-)
Gene ID: Rep_460_c_11_9
Type: pfam
Location: 7002 - 9041 (-)
Gene ID: Rep_460_c_11_10
Type: TC
Location: 9183 - 10235 (-)
Gene ID: Rep_460_c_11_11
Type:
Location: 10239 - 10391 (-)
Gene ID: Rep_460_c_11_12
Type: TC
Location: 10453 - 11994 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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