Cluster: Rep_460_CGC42
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 13
- Substrate:
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00217
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_460_c_10 | Rep_460_c_10_37 | 53140 | 55155 | - | GH154 |
| TF | Rep_460_c_10 | Rep_460_c_10_38 | 55401 | 59612 | + | HTH_AraC |
| TC | Rep_460_c_10 | Rep_460_c_10_39 | 60312 | 63464 | + | 1.B.14.6.1 |
| pfam | Rep_460_c_10 | Rep_460_c_10_40 | 63493 | 65418 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_460_c_10 | Rep_460_c_10_41 | 65454 | 68474 | + | 1.B.14.6.1 |
| pfam | Rep_460_c_10 | Rep_460_c_10_42 | 68505 | 70172 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_43 | 70206 | 71105 | + | CBM32 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_44 | 71125 | 72597 | + | GH16_3 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_45 | 72686 | 74584 | + | GH16_3 | GH43_24 |
| TF | Rep_460_c_10 | Rep_460_c_10_46 | 75356 | 79555 | + | HTH_AraC |
| TC | Rep_460_c_10 | Rep_460_c_10_47 | 79810 | 83151 | + | 1.B.14.6.1 |
| TC | Rep_460_c_10 | Rep_460_c_10_48 | 83164 | 85203 | + | 8.A.46.1.1 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_49 | 85308 | 86432 | + | GH43_24 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_50 | 86612 | 87862 | + | GH154 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_51 | 87902 | 89191 | + | PL42 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_52 | 89441 | 90565 | + | GH105 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_53 | 90691 | 92691 | + | GH43_19 | GH43_34 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_54 | 92763 | 95690 | + | GH43_19 | GH97 |
| NULL(UNKNOWN) | Rep_460_c_10 | Rep_460_c_10_55 | 95761 | 95994 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_56 | 96015 | 98543 | + | GH51_2 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_57 | 98717 | 100654 | + | GH51_2 |
| CAZyme | Rep_460_c_10 | Rep_460_c_10_58 | 100804 | 103899 | + | GH2 |
Gene ID: Rep_460_c_10_37
Type: CAZyme
Location: 53140 - 55155 (-)
Type: CAZyme
Location: 53140 - 55155 (-)
Gene ID: Rep_460_c_10_38
Type: TF
Location: 55401 - 59612 (+)
Type: TF
Location: 55401 - 59612 (+)
Gene ID: Rep_460_c_10_39
Type: TC
Location: 60312 - 63464 (+)
Type: TC
Location: 60312 - 63464 (+)
Gene ID: Rep_460_c_10_40
Type: pfam
Location: 63493 - 65418 (+)
Type: pfam
Location: 63493 - 65418 (+)
Gene ID: Rep_460_c_10_41
Type: TC
Location: 65454 - 68474 (+)
Type: TC
Location: 65454 - 68474 (+)
Gene ID: Rep_460_c_10_42
Type: pfam
Location: 68505 - 70172 (+)
Type: pfam
Location: 68505 - 70172 (+)
Gene ID: Rep_460_c_10_43
Type: CAZyme
Location: 70206 - 71105 (+)
Type: CAZyme
Location: 70206 - 71105 (+)
Gene ID: Rep_460_c_10_44
Type: CAZyme
Location: 71125 - 72597 (+)
Type: CAZyme
Location: 71125 - 72597 (+)
Gene ID: Rep_460_c_10_45
Type: CAZyme
Location: 72686 - 74584 (+)
Type: CAZyme
Location: 72686 - 74584 (+)
Gene ID: Rep_460_c_10_46
Type: TF
Location: 75356 - 79555 (+)
Type: TF
Location: 75356 - 79555 (+)
Gene ID: Rep_460_c_10_47
Type: TC
Location: 79810 - 83151 (+)
Type: TC
Location: 79810 - 83151 (+)
Gene ID: Rep_460_c_10_48
Type: TC
Location: 83164 - 85203 (+)
Type: TC
Location: 83164 - 85203 (+)
Gene ID: Rep_460_c_10_49
Type: CAZyme
Location: 85308 - 86432 (+)
Type: CAZyme
Location: 85308 - 86432 (+)
Gene ID: Rep_460_c_10_50
Type: CAZyme
Location: 86612 - 87862 (+)
Type: CAZyme
Location: 86612 - 87862 (+)
Gene ID: Rep_460_c_10_51
Type: CAZyme
Location: 87902 - 89191 (+)
Type: CAZyme
Location: 87902 - 89191 (+)
Gene ID: Rep_460_c_10_52
Type: CAZyme
Location: 89441 - 90565 (+)
Type: CAZyme
Location: 89441 - 90565 (+)
Gene ID: Rep_460_c_10_53
Type: CAZyme
Location: 90691 - 92691 (+)
Type: CAZyme
Location: 90691 - 92691 (+)
Gene ID: Rep_460_c_10_54
Type: CAZyme
Location: 92763 - 95690 (+)
Type: CAZyme
Location: 92763 - 95690 (+)
Gene ID: Rep_460_c_10_55
Type:
Location: 95761 - 95994 (+)
Type:
Location: 95761 - 95994 (+)
Gene ID: Rep_460_c_10_56
Type: CAZyme
Location: 96015 - 98543 (+)
Type: CAZyme
Location: 96015 - 98543 (+)
Gene ID: Rep_460_c_10_57
Type: CAZyme
Location: 98717 - 100654 (+)
Type: CAZyme
Location: 98717 - 100654 (+)
Gene ID: Rep_460_c_10_58
Type: CAZyme
Location: 100804 - 103899 (+)
Type: CAZyme
Location: 100804 - 103899 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.