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Cluster: Rep_460_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_9 Rep_460_c_9_133 142222 144693 - GH31_4
TF Rep_460_c_9 Rep_460_c_9_134 144782 147415 - HTH_AraC
pfam Rep_460_c_9 Rep_460_c_9_135 147829 148332 + DUF4251
TC Rep_460_c_9 Rep_460_c_9_136 148425 149000 + 1.A.78.2.5
STP Rep_460_c_9 Rep_460_c_9_137 149035 149853 + HTH_18
pfam Rep_460_c_9 Rep_460_c_9_138 149930 150337 + PNPOx_N | Pyrid_ox_like
TC Rep_460_c_9 Rep_460_c_9_139 150539 151867 + 2.A.66.1.13
TC Rep_460_c_9 Rep_460_c_9_140 151973 152638 + 9.B.186.1.3
Gene ID: Rep_460_c_9_133
Type: CAZyme
Location: 142222 - 144693 (-)
Gene ID: Rep_460_c_9_134
Type: TF
Location: 144782 - 147415 (-)
Gene ID: Rep_460_c_9_135
Type: pfam
Location: 147829 - 148332 (+)
Gene ID: Rep_460_c_9_136
Type: TC
Location: 148425 - 149000 (+)
Gene ID: Rep_460_c_9_137
Type: STP
Location: 149035 - 149853 (+)
Gene ID: Rep_460_c_9_138
Type: pfam
Location: 149930 - 150337 (+)
Gene ID: Rep_460_c_9_139
Type: TC
Location: 150539 - 151867 (+)
Gene ID: Rep_460_c_9_140
Type: TC
Location: 151973 - 152638 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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