Cluster: Rep_460_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00669
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_460_c_0 | Rep_460_c_0_57 | 75856 | 78303 | + | GH20 |
| STP | Rep_460_c_0 | Rep_460_c_0_58 | 78383 | 79330 | - | Pyr_redox_2 |
| pfam | Rep_460_c_0 | Rep_460_c_0_59 | 79416 | 80057 | - | LolA_2 |
| TC | Rep_460_c_0 | Rep_460_c_0_60 | 80075 | 82579 | - | 3.A.12.1.1 |
| NULL(UNKNOWN) | Rep_460_c_0 | Rep_460_c_0_61 | 83176 | 83793 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_460_c_0 | Rep_460_c_0_62 | 83832 | 85190 | + | 1.B.14.6.12 |
Gene ID: Rep_460_c_0_57
Type: CAZyme
Location: 75856 - 78303 (+)
Type: CAZyme
Location: 75856 - 78303 (+)
Gene ID: Rep_460_c_0_58
Type: STP
Location: 78383 - 79330 (-)
Type: STP
Location: 78383 - 79330 (-)
Gene ID: Rep_460_c_0_59
Type: pfam
Location: 79416 - 80057 (-)
Type: pfam
Location: 79416 - 80057 (-)
Gene ID: Rep_460_c_0_60
Type: TC
Location: 80075 - 82579 (-)
Type: TC
Location: 80075 - 82579 (-)
Gene ID: Rep_460_c_0_61
Type:
Location: 83176 - 83793 (+)
Type:
Location: 83176 - 83793 (+)
Gene ID: Rep_460_c_0_62
Type: TC
Location: 83832 - 85190 (+)
Type: TC
Location: 83832 - 85190 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_0_57 | vegetarian > omnivore | 1.12586 | 0.00207 |
| Rep_460_c_0_59 | vegetarian > omnivore | 1.25252 | 0.00207 |