Cluster: Rep_460_CGC30
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00298
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_6 | Rep_460_c_6_72 | 101799 | 104177 | - | 1.B.14.3.6 |
| pfam | Rep_460_c_6 | Rep_460_c_6_73 | 104405 | 106354 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_460_c_6 | Rep_460_c_6_74 | 106378 | 109467 | - | 1.B.14.6.1 |
| sulfatase | Rep_460_c_6 | Rep_460_c_6_75 | 109794 | 111191 | - | S1_20 |
| CAZyme | Rep_460_c_6 | Rep_460_c_6_76 | 111248 | 112669 | - | GH28 |
| CAZyme | Rep_460_c_6 | Rep_460_c_6_77 | 112756 | 114132 | - | PL1_2 |
| sulfatase | Rep_460_c_6 | Rep_460_c_6_78 | 114269 | 116266 | - | S1_27 |
| TC | Rep_460_c_6 | Rep_460_c_6_79 | 116281 | 119487 | - | 1.B.14.6.1 |
| TF | Rep_460_c_6 | Rep_460_c_6_80 | 119761 | 120687 | - | HTH_AraC |
| CAZyme | Rep_460_c_6 | Rep_460_c_6_81 | 120816 | 122114 | - | GH105 |
| pfam | Rep_460_c_6 | Rep_460_c_6_82 | 122185 | 122994 | - | Aldolase_II |
| TC | Rep_460_c_6 | Rep_460_c_6_83 | 123169 | 124200 | - | 2.A.7.6.1 |
| pfam | Rep_460_c_6 | Rep_460_c_6_84 | 124446 | 125696 | - | RhaA |
| pfam | Rep_460_c_6 | Rep_460_c_6_85 | 125761 | 127218 | - | FGGY_N | FGGY_C |
| CAZyme | Rep_460_c_6 | Rep_460_c_6_86 | 127344 | 128882 | - | GH28 |
| CAZyme | Rep_460_c_6 | Rep_460_c_6_87 | 128914 | 130749 | - | PL11 |
| CAZyme | Rep_460_c_6 | Rep_460_c_6_88 | 130765 | 133563 | - | GH106 |
| CAZyme | Rep_460_c_6 | Rep_460_c_6_89 | 133762 | 136293 | - | CE20 | GH105 |
Gene ID: Rep_460_c_6_72
Type: TC
Location: 101799 - 104177 (-)
Type: TC
Location: 101799 - 104177 (-)
Gene ID: Rep_460_c_6_73
Type: pfam
Location: 104405 - 106354 (-)
Type: pfam
Location: 104405 - 106354 (-)
Gene ID: Rep_460_c_6_74
Type: TC
Location: 106378 - 109467 (-)
Type: TC
Location: 106378 - 109467 (-)
Gene ID: Rep_460_c_6_75
Type: sulfatase
Location: 109794 - 111191 (-)
Type: sulfatase
Location: 109794 - 111191 (-)
Gene ID: Rep_460_c_6_76
Type: CAZyme
Location: 111248 - 112669 (-)
Type: CAZyme
Location: 111248 - 112669 (-)
Gene ID: Rep_460_c_6_77
Type: CAZyme
Location: 112756 - 114132 (-)
Type: CAZyme
Location: 112756 - 114132 (-)
Gene ID: Rep_460_c_6_78
Type: sulfatase
Location: 114269 - 116266 (-)
Type: sulfatase
Location: 114269 - 116266 (-)
Gene ID: Rep_460_c_6_79
Type: TC
Location: 116281 - 119487 (-)
Type: TC
Location: 116281 - 119487 (-)
Gene ID: Rep_460_c_6_80
Type: TF
Location: 119761 - 120687 (-)
Type: TF
Location: 119761 - 120687 (-)
Gene ID: Rep_460_c_6_81
Type: CAZyme
Location: 120816 - 122114 (-)
Type: CAZyme
Location: 120816 - 122114 (-)
Gene ID: Rep_460_c_6_82
Type: pfam
Location: 122185 - 122994 (-)
Type: pfam
Location: 122185 - 122994 (-)
Gene ID: Rep_460_c_6_83
Type: TC
Location: 123169 - 124200 (-)
Type: TC
Location: 123169 - 124200 (-)
Gene ID: Rep_460_c_6_84
Type: pfam
Location: 124446 - 125696 (-)
Type: pfam
Location: 124446 - 125696 (-)
Gene ID: Rep_460_c_6_85
Type: pfam
Location: 125761 - 127218 (-)
Type: pfam
Location: 125761 - 127218 (-)
Gene ID: Rep_460_c_6_86
Type: CAZyme
Location: 127344 - 128882 (-)
Type: CAZyme
Location: 127344 - 128882 (-)
Gene ID: Rep_460_c_6_87
Type: CAZyme
Location: 128914 - 130749 (-)
Type: CAZyme
Location: 128914 - 130749 (-)
Gene ID: Rep_460_c_6_88
Type: CAZyme
Location: 130765 - 133563 (-)
Type: CAZyme
Location: 130765 - 133563 (-)
Gene ID: Rep_460_c_6_89
Type: CAZyme
Location: 133762 - 136293 (-)
Type: CAZyme
Location: 133762 - 136293 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.