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Cluster: Rep_460_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_0 Rep_460_c_0_46 55213 57369 - GH97
TC Rep_460_c_0 Rep_460_c_0_47 57592 57963 + 1.A.43.1.13
pfam Rep_460_c_0 Rep_460_c_0_48 58056 59336 + Enolase_C | Enolase_N
CAZyme Rep_460_c_0 Rep_460_c_0_49 59435 61690 - GH3
CAZyme Rep_460_c_0 Rep_460_c_0_50 61701 62822 - GH16_3
NULL(UNKNOWN) Rep_460_c_0 Rep_460_c_0_51 62889 65228 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_460_c_0 Rep_460_c_0_52 65250 66767 - SusD_RagB | SusD-like_2 | SusD-like_3
TC Rep_460_c_0 Rep_460_c_0_53 66794 69937 - 1.B.14.6.1
Gene ID: Rep_460_c_0_46
Type: CAZyme
Location: 55213 - 57369 (-)
Gene ID: Rep_460_c_0_47
Type: TC
Location: 57592 - 57963 (+)
Gene ID: Rep_460_c_0_48
Type: pfam
Location: 58056 - 59336 (+)
Gene ID: Rep_460_c_0_49
Type: CAZyme
Location: 59435 - 61690 (-)
Gene ID: Rep_460_c_0_50
Type: CAZyme
Location: 61701 - 62822 (-)
Gene ID: Rep_460_c_0_51
Type:
Location: 62889 - 65228 (-)
Gene ID: Rep_460_c_0_52
Type: pfam
Location: 65250 - 66767 (-)
Gene ID: Rep_460_c_0_53
Type: TC
Location: 66794 - 69937 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_0_47 vegan > omnivore 1.63770 0.00582
Rep_460_c_0_47 vegetarian > omnivore 1.63497 0.00207

🧭 Explore Read Mapping of CGC

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