Cluster: Rep_460_CGC27
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00823
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_5 | Rep_460_c_5_87 | 107288 | 108841 | - | 2.A.47.4.5 |
| pfam | Rep_460_c_5 | Rep_460_c_5_88 | 108860 | 109681 | - | Inositol_P |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_89 | 109982 | 111541 | - | GH109 |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_90 | 111603 | 114971 | - | GH2 |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_91 | 115155 | 117863 | - | GH2 |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_92 | 117868 | 119094 | - | GH88 |
| pfam | Rep_460_c_5 | Rep_460_c_5_93 | 119226 | 120905 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_460_c_5 | Rep_460_c_5_94 | 120920 | 123694 | - | 1.B.14.6.1 |
| pfam | Rep_460_c_5 | Rep_460_c_5_95 | 123725 | 125590 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_460_c_5 | Rep_460_c_5_96 | 125612 | 128755 | - | 1.B.14.6.1 |
| TF | Rep_460_c_5 | Rep_460_c_5_97 | 129216 | 133259 | - | HTH_AraC |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_98 | 133491 | 135869 | + | GH95 |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_99 | 135899 | 137332 | + | GH29 |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_100 | 137316 | 138452 | + | GH105 |
| CAZyme | Rep_460_c_5 | Rep_460_c_5_101 | 138498 | 140648 | + | PL8_3 |
Gene ID: Rep_460_c_5_87
Type: TC
Location: 107288 - 108841 (-)
Type: TC
Location: 107288 - 108841 (-)
Gene ID: Rep_460_c_5_88
Type: pfam
Location: 108860 - 109681 (-)
Type: pfam
Location: 108860 - 109681 (-)
Gene ID: Rep_460_c_5_89
Type: CAZyme
Location: 109982 - 111541 (-)
Type: CAZyme
Location: 109982 - 111541 (-)
Gene ID: Rep_460_c_5_90
Type: CAZyme
Location: 111603 - 114971 (-)
Type: CAZyme
Location: 111603 - 114971 (-)
Gene ID: Rep_460_c_5_91
Type: CAZyme
Location: 115155 - 117863 (-)
Type: CAZyme
Location: 115155 - 117863 (-)
Gene ID: Rep_460_c_5_92
Type: CAZyme
Location: 117868 - 119094 (-)
Type: CAZyme
Location: 117868 - 119094 (-)
Gene ID: Rep_460_c_5_93
Type: pfam
Location: 119226 - 120905 (-)
Type: pfam
Location: 119226 - 120905 (-)
Gene ID: Rep_460_c_5_94
Type: TC
Location: 120920 - 123694 (-)
Type: TC
Location: 120920 - 123694 (-)
Gene ID: Rep_460_c_5_95
Type: pfam
Location: 123725 - 125590 (-)
Type: pfam
Location: 123725 - 125590 (-)
Gene ID: Rep_460_c_5_96
Type: TC
Location: 125612 - 128755 (-)
Type: TC
Location: 125612 - 128755 (-)
Gene ID: Rep_460_c_5_97
Type: TF
Location: 129216 - 133259 (-)
Type: TF
Location: 129216 - 133259 (-)
Gene ID: Rep_460_c_5_98
Type: CAZyme
Location: 133491 - 135869 (+)
Type: CAZyme
Location: 133491 - 135869 (+)
Gene ID: Rep_460_c_5_99
Type: CAZyme
Location: 135899 - 137332 (+)
Type: CAZyme
Location: 135899 - 137332 (+)
Gene ID: Rep_460_c_5_100
Type: CAZyme
Location: 137316 - 138452 (+)
Type: CAZyme
Location: 137316 - 138452 (+)
Gene ID: Rep_460_c_5_101
Type: CAZyme
Location: 138498 - 140648 (+)
Type: CAZyme
Location: 138498 - 140648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.