Cluster: Rep_460_CGC26
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 12
- Substrate:
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_01176
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_4 | Rep_460_c_4_113 | 174909 | 178238 | + | 1.B.14.6.1 |
| pfam | Rep_460_c_4 | Rep_460_c_4_114 | 178286 | 180070 | + | SusD_RagB | SusD-like_3 |
| sulfatase | Rep_460_c_4 | Rep_460_c_4_115 | 180165 | 181718 | + | S1_67 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_116 | 181777 | 182742 | + | GH43_31 |
| TF | Rep_460_c_4 | Rep_460_c_4_117 | 183197 | 187222 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_118 | 187485 | 188588 | + | GH105 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_119 | 188641 | 191361 | + | GH2 |
| sulfatase | Rep_460_c_4 | Rep_460_c_4_120 | 191373 | 193235 | + | S1_24 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_121 | 193274 | 194422 | + | GH130_3 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_122 | 194487 | 195593 | + | GH105 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_123 | 195620 | 198577 | + | GH115 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_124 | 198586 | 201132 | + | GH31_15 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_125 | 201432 | 204188 | + | GH63 |
| TC | Rep_460_c_4 | Rep_460_c_4_126 | 204511 | 207633 | + | 1.B.14.6.1 |
| TC | Rep_460_c_4 | Rep_460_c_4_127 | 207668 | 209491 | + | 8.A.46.1.6 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_128 | 209494 | 210525 | + | GH43_3 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_129 | 210540 | 211517 | + | GH43_3 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_130 | 211563 | 213575 | + | GH182 |
| pfam | Rep_460_c_4 | Rep_460_c_4_131 | 213791 | 214201 | - | YbeY |
| TC | Rep_460_c_4 | Rep_460_c_4_132 | 214221 | 215453 | - | 9.B.156.3.1 |
| CAZyme | Rep_460_c_4 | Rep_460_c_4_133 | 215632 | 217578 | + | CE20 | CE20 |
Gene ID: Rep_460_c_4_113
Type: TC
Location: 174909 - 178238 (+)
Type: TC
Location: 174909 - 178238 (+)
Gene ID: Rep_460_c_4_114
Type: pfam
Location: 178286 - 180070 (+)
Type: pfam
Location: 178286 - 180070 (+)
Gene ID: Rep_460_c_4_115
Type: sulfatase
Location: 180165 - 181718 (+)
Type: sulfatase
Location: 180165 - 181718 (+)
Gene ID: Rep_460_c_4_116
Type: CAZyme
Location: 181777 - 182742 (+)
Type: CAZyme
Location: 181777 - 182742 (+)
Gene ID: Rep_460_c_4_117
Type: TF
Location: 183197 - 187222 (+)
Type: TF
Location: 183197 - 187222 (+)
Gene ID: Rep_460_c_4_118
Type: CAZyme
Location: 187485 - 188588 (+)
Type: CAZyme
Location: 187485 - 188588 (+)
Gene ID: Rep_460_c_4_119
Type: CAZyme
Location: 188641 - 191361 (+)
Type: CAZyme
Location: 188641 - 191361 (+)
Gene ID: Rep_460_c_4_120
Type: sulfatase
Location: 191373 - 193235 (+)
Type: sulfatase
Location: 191373 - 193235 (+)
Gene ID: Rep_460_c_4_121
Type: CAZyme
Location: 193274 - 194422 (+)
Type: CAZyme
Location: 193274 - 194422 (+)
Gene ID: Rep_460_c_4_122
Type: CAZyme
Location: 194487 - 195593 (+)
Type: CAZyme
Location: 194487 - 195593 (+)
Gene ID: Rep_460_c_4_123
Type: CAZyme
Location: 195620 - 198577 (+)
Type: CAZyme
Location: 195620 - 198577 (+)
Gene ID: Rep_460_c_4_124
Type: CAZyme
Location: 198586 - 201132 (+)
Type: CAZyme
Location: 198586 - 201132 (+)
Gene ID: Rep_460_c_4_125
Type: CAZyme
Location: 201432 - 204188 (+)
Type: CAZyme
Location: 201432 - 204188 (+)
Gene ID: Rep_460_c_4_126
Type: TC
Location: 204511 - 207633 (+)
Type: TC
Location: 204511 - 207633 (+)
Gene ID: Rep_460_c_4_127
Type: TC
Location: 207668 - 209491 (+)
Type: TC
Location: 207668 - 209491 (+)
Gene ID: Rep_460_c_4_128
Type: CAZyme
Location: 209494 - 210525 (+)
Type: CAZyme
Location: 209494 - 210525 (+)
Gene ID: Rep_460_c_4_129
Type: CAZyme
Location: 210540 - 211517 (+)
Type: CAZyme
Location: 210540 - 211517 (+)
Gene ID: Rep_460_c_4_130
Type: CAZyme
Location: 211563 - 213575 (+)
Type: CAZyme
Location: 211563 - 213575 (+)
Gene ID: Rep_460_c_4_131
Type: pfam
Location: 213791 - 214201 (-)
Type: pfam
Location: 213791 - 214201 (-)
Gene ID: Rep_460_c_4_132
Type: TC
Location: 214221 - 215453 (-)
Type: TC
Location: 214221 - 215453 (-)
Gene ID: Rep_460_c_4_133
Type: CAZyme
Location: 215632 - 217578 (+)
Type: CAZyme
Location: 215632 - 217578 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_4_113 | vegan > omnivore | 1.72944 | 0.00582 |
| Rep_460_c_4_113 | vegetarian > omnivore | 1.00153 | 0.00207 |
| Rep_460_c_4_114 | vegan > omnivore | 1.81471 | 0.00582 |
| Rep_460_c_4_115 | vegan > omnivore | 1.76124 | 0.00582 |
| Rep_460_c_4_115 | vegetarian > omnivore | 1.10058 | 0.00207 |
| Rep_460_c_4_116 | vegan > omnivore | 1.34543 | 0.00582 |
| Rep_460_c_4_118 | vegan > omnivore | 3.02598 | 0.00582 |
| Rep_460_c_4_118 | vegetarian > omnivore | 1.81943 | 0.00207 |
| Rep_460_c_4_119 | vegan > omnivore | 1.24286 | 0.00582 |
| Rep_460_c_4_120 | vegan > omnivore | 2.59275 | 0.00582 |
| Rep_460_c_4_122 | vegan > omnivore | 2.62917 | 0.00582 |
| Rep_460_c_4_122 | vegetarian > omnivore | 1.64262 | 0.00207 |
| Rep_460_c_4_123 | vegan > omnivore | 2.54248 | 0.00582 |
| Rep_460_c_4_123 | vegetarian > omnivore | 1.49895 | 0.00207 |
| Rep_460_c_4_126 | vegetarian > omnivore | 2.83727 | 0.00207 |
| Rep_460_c_4_126 | vegan > omnivore | 3.87664 | 0.00582 |
| Rep_460_c_4_127 | vegetarian > omnivore | 1.82471 | 0.00207 |
| Rep_460_c_4_127 | vegan > omnivore | 3.06864 | 0.00582 |
| Rep_460_c_4_128 | vegan > omnivore | 5.09557 | 0.00582 |
| Rep_460_c_4_128 | vegetarian > omnivore | 3.85164 | 0.00207 |