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Cluster: Rep_460_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_460_c_4 Rep_460_c_4_29 46351 49815 + 1.B.14.6.1
pfam Rep_460_c_4 Rep_460_c_4_30 49849 51855 + SusD_RagB | SusD-like_3
CAZyme Rep_460_c_4 Rep_460_c_4_31 51946 54003 + GH42
CAZyme Rep_460_c_4 Rep_460_c_4_32 54026 56884 + GH2
CAZyme Rep_460_c_4 Rep_460_c_4_33 57027 58508 - GH30_2
pfam Rep_460_c_4 Rep_460_c_4_34 58969 61584 + MutS_V | MutS_I | MutS_II | MutS_IV | MutS_III
TF Rep_460_c_4 Rep_460_c_4_35 61669 65721 - HTH_AraC
CAZyme Rep_460_c_4 Rep_460_c_4_36 65940 69551 + GH38
TC Rep_460_c_4 Rep_460_c_4_37 69650 71314 - 2.A.21.3.7
Gene ID: Rep_460_c_4_29
Type: TC
Location: 46351 - 49815 (+)
Gene ID: Rep_460_c_4_30
Type: pfam
Location: 49849 - 51855 (+)
Gene ID: Rep_460_c_4_31
Type: CAZyme
Location: 51946 - 54003 (+)
Gene ID: Rep_460_c_4_32
Type: CAZyme
Location: 54026 - 56884 (+)
Gene ID: Rep_460_c_4_33
Type: CAZyme
Location: 57027 - 58508 (-)
Gene ID: Rep_460_c_4_34
Type: pfam
Location: 58969 - 61584 (+)
Gene ID: Rep_460_c_4_35
Type: TF
Location: 61669 - 65721 (-)
Gene ID: Rep_460_c_4_36
Type: CAZyme
Location: 65940 - 69551 (+)
Gene ID: Rep_460_c_4_37
Type: TC
Location: 69650 - 71314 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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