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Cluster: Rep_460_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_460_c_0 Rep_460_c_0_29 36689 38086 + 2.A.1.3.17
TC Rep_460_c_0 Rep_460_c_0_30 38233 38823 - 9.B.18.1.3
pfam Rep_460_c_0 Rep_460_c_0_31 38820 40040 - Aminotran_1_2 | DegT_DnrJ_EryC1
pfam Rep_460_c_0 Rep_460_c_0_32 40057 40812 - YjbH
CAZyme Rep_460_c_0 Rep_460_c_0_33 40809 41633 - GT2
NULL(UNKNOWN) Rep_460_c_0 Rep_460_c_0_34 41642 42922 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_460_c_0 Rep_460_c_0_35 42934 43908 - GT2
CAZyme Rep_460_c_0 Rep_460_c_0_36 43912 44838 - GT2
Gene ID: Rep_460_c_0_29
Type: TC
Location: 36689 - 38086 (+)
Gene ID: Rep_460_c_0_30
Type: TC
Location: 38233 - 38823 (-)
Gene ID: Rep_460_c_0_31
Type: pfam
Location: 38820 - 40040 (-)
Gene ID: Rep_460_c_0_32
Type: pfam
Location: 40057 - 40812 (-)
Gene ID: Rep_460_c_0_33
Type: CAZyme
Location: 40809 - 41633 (-)
Gene ID: Rep_460_c_0_34
Type:
Location: 41642 - 42922 (-)
Gene ID: Rep_460_c_0_35
Type: CAZyme
Location: 42934 - 43908 (-)
Gene ID: Rep_460_c_0_36
Type: CAZyme
Location: 43912 - 44838 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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