Cluster: Rep_460_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_01055
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_2 | Rep_460_c_2_132 | 185633 | 189604 | + | 9.A.25.1.1 |
| pfam | Rep_460_c_2 | Rep_460_c_2_133 | 189842 | 190585 | + | DAHP_synth_1 |
| TC | Rep_460_c_2 | Rep_460_c_2_134 | 190569 | 193001 | + | 9.B.14.3.1 |
| NULL(UNKNOWN) | Rep_460_c_2 | Rep_460_c_2_135 | 193040 | 193150 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_136 | 193283 | 194422 | + | GH105 |
| TF | Rep_460_c_2 | Rep_460_c_2_137 | 194523 | 198629 | + | HTH_AraC |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_138 | 198777 | 200000 | + | GH88 |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_139 | 200021 | 202465 | + | GH2 |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_140 | 202470 | 203636 | + | PL38 |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_141 | 203666 | 204973 | + | GH105 |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_142 | 204980 | 207160 | + | PL8_3 |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_143 | 207262 | 209535 | + | GH95 |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_144 | 209548 | 211104 | + | PL29 |
| TC | Rep_460_c_2 | Rep_460_c_2_145 | 211414 | 214563 | + | 1.B.14.6.1 |
| TC | Rep_460_c_2 | Rep_460_c_2_146 | 214577 | 216160 | + | 8.A.46.1.4 |
Gene ID: Rep_460_c_2_132
Type: TC
Location: 185633 - 189604 (+)
Type: TC
Location: 185633 - 189604 (+)
Gene ID: Rep_460_c_2_133
Type: pfam
Location: 189842 - 190585 (+)
Type: pfam
Location: 189842 - 190585 (+)
Gene ID: Rep_460_c_2_134
Type: TC
Location: 190569 - 193001 (+)
Type: TC
Location: 190569 - 193001 (+)
Gene ID: Rep_460_c_2_135
Type:
Location: 193040 - 193150 (+)
Type:
Location: 193040 - 193150 (+)
Gene ID: Rep_460_c_2_136
Type: CAZyme
Location: 193283 - 194422 (+)
Type: CAZyme
Location: 193283 - 194422 (+)
Gene ID: Rep_460_c_2_137
Type: TF
Location: 194523 - 198629 (+)
Type: TF
Location: 194523 - 198629 (+)
Gene ID: Rep_460_c_2_138
Type: CAZyme
Location: 198777 - 200000 (+)
Type: CAZyme
Location: 198777 - 200000 (+)
Gene ID: Rep_460_c_2_139
Type: CAZyme
Location: 200021 - 202465 (+)
Type: CAZyme
Location: 200021 - 202465 (+)
Gene ID: Rep_460_c_2_140
Type: CAZyme
Location: 202470 - 203636 (+)
Type: CAZyme
Location: 202470 - 203636 (+)
Gene ID: Rep_460_c_2_141
Type: CAZyme
Location: 203666 - 204973 (+)
Type: CAZyme
Location: 203666 - 204973 (+)
Gene ID: Rep_460_c_2_142
Type: CAZyme
Location: 204980 - 207160 (+)
Type: CAZyme
Location: 204980 - 207160 (+)
Gene ID: Rep_460_c_2_143
Type: CAZyme
Location: 207262 - 209535 (+)
Type: CAZyme
Location: 207262 - 209535 (+)
Gene ID: Rep_460_c_2_144
Type: CAZyme
Location: 209548 - 211104 (+)
Type: CAZyme
Location: 209548 - 211104 (+)
Gene ID: Rep_460_c_2_145
Type: TC
Location: 211414 - 214563 (+)
Type: TC
Location: 211414 - 214563 (+)
Gene ID: Rep_460_c_2_146
Type: TC
Location: 214577 - 216160 (+)
Type: TC
Location: 214577 - 216160 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_2_132 | vegan > omnivore | 1.85509 | 0.00582 |
| Rep_460_c_2_132 | vegetarian > omnivore | 2.23479 | 0.00207 |
| Rep_460_c_2_133 | vegan > omnivore | 2.25151 | 0.00582 |
| Rep_460_c_2_133 | vegetarian > omnivore | 2.23941 | 0.00207 |
| Rep_460_c_2_136 | vegan > omnivore | 1.96952 | 0.00582 |
| Rep_460_c_2_136 | vegetarian > omnivore | 2.40677 | 0.00207 |
| Rep_460_c_2_145 | vegan > omnivore | 4.19123 | 0.00582 |
| Rep_460_c_2_145 | vegetarian > omnivore | 3.64464 | 0.00207 |
| Rep_460_c_2_146 | vegan > omnivore | 3.72503 | 0.00582 |
| Rep_460_c_2_146 | vegetarian > omnivore | 2.84341 | 0.00207 |