Cluster: Rep_460_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00184
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_460_c_2 | Rep_460_c_2_18 | 20191 | 21792 | - | GH32 |
| pfam | Rep_460_c_2 | Rep_460_c_2_19 | 21804 | 23207 | - | DUF4960 |
| TC | Rep_460_c_2 | Rep_460_c_2_20 | 23229 | 24962 | - | 8.A.46.1.5 |
| TC | Rep_460_c_2 | Rep_460_c_2_21 | 24982 | 28089 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_460_c_2 | Rep_460_c_2_22 | 28134 | 28304 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_23 | 28534 | 30336 | + | GH32 |
| pfam | Rep_460_c_2 | Rep_460_c_2_24 | 30498 | 31370 | - | Aldose_epim |
| TC | Rep_460_c_2 | Rep_460_c_2_25 | 31577 | 32737 | + | 2.A.1.7.17 |
| STP | Rep_460_c_2 | Rep_460_c_2_26 | 32777 | 33664 | + | PfkB |
| NULL(UNKNOWN) | Rep_460_c_2 | Rep_460_c_2_27 | 34138 | 34404 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_460_c_2 | Rep_460_c_2_28 | 34447 | 36636 | + | GH36 |
Gene ID: Rep_460_c_2_18
Type: CAZyme
Location: 20191 - 21792 (-)
Type: CAZyme
Location: 20191 - 21792 (-)
Gene ID: Rep_460_c_2_19
Type: pfam
Location: 21804 - 23207 (-)
Type: pfam
Location: 21804 - 23207 (-)
Gene ID: Rep_460_c_2_20
Type: TC
Location: 23229 - 24962 (-)
Type: TC
Location: 23229 - 24962 (-)
Gene ID: Rep_460_c_2_21
Type: TC
Location: 24982 - 28089 (-)
Type: TC
Location: 24982 - 28089 (-)
Gene ID: Rep_460_c_2_22
Type:
Location: 28134 - 28304 (+)
Type:
Location: 28134 - 28304 (+)
Gene ID: Rep_460_c_2_23
Type: CAZyme
Location: 28534 - 30336 (+)
Type: CAZyme
Location: 28534 - 30336 (+)
Gene ID: Rep_460_c_2_24
Type: pfam
Location: 30498 - 31370 (-)
Type: pfam
Location: 30498 - 31370 (-)
Gene ID: Rep_460_c_2_25
Type: TC
Location: 31577 - 32737 (+)
Type: TC
Location: 31577 - 32737 (+)
Gene ID: Rep_460_c_2_26
Type: STP
Location: 32777 - 33664 (+)
Type: STP
Location: 32777 - 33664 (+)
Gene ID: Rep_460_c_2_27
Type:
Location: 34138 - 34404 (+)
Type:
Location: 34138 - 34404 (+)
Gene ID: Rep_460_c_2_28
Type: CAZyme
Location: 34447 - 36636 (+)
Type: CAZyme
Location: 34447 - 36636 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_2_18 | vegetarian > omnivore | 1.14878 | 0.00207 |
| Rep_460_c_2_20 | vegan > omnivore | 2.55828 | 0.00286 |
| Rep_460_c_2_20 | vegetarian > omnivore | 2.76441 | 0.00207 |
| Rep_460_c_2_24 | vegan > omnivore | 1.45642 | 0.00286 |