Cluster: Rep_460_CGC15
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 16
- Substrate:
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_02735
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_1 | Rep_460_c_1_174 | 245395 | 246966 | + | 3.D.10.1.4 |
| pfam | Rep_460_c_1 | Rep_460_c_1_175 | 247071 | 247649 | - | Ferritin | Rubrerythrin | RUBY_RBDX |
| pfam | Rep_460_c_1 | Rep_460_c_1_176 | 247858 | 248151 | + | DUF4884 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_177 | 248177 | 249262 | - | GH43_29 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_178 | 249304 | 251325 | - | CBM51 | GH27 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_179 | 251375 | 253996 | - | GH31_4 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_180 | 254012 | 255373 | - | CBM6 | GH43_29 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_181 | 255392 | 257413 | - | GH97 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_182 | 257564 | 259165 | - | CBM91 | GH43_10 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_183 | 259219 | 260604 | - | CBM6 | GH43_29 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_184 | 260643 | 263057 | - | GH31_4 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_185 | 263219 | 265777 | - | GH2 |
| pfam | Rep_460_c_1 | Rep_460_c_1_186 | 265795 | 266310 | - | Glyco_hydro_2_N |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_187 | 266316 | 268208 | - | GH97 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_188 | 268542 | 270959 | - | GH146 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_189 | 271216 | 273135 | + | CE1 | CE1 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_190 | 273330 | 275414 | + | GH43_35 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_191 | 275555 | 277927 | + | GH146 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_192 | 277936 | 279843 | - | GH97 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_193 | 279861 | 282968 | - | GH2 |
Gene ID: Rep_460_c_1_174
Type: TC
Location: 245395 - 246966 (+)
Type: TC
Location: 245395 - 246966 (+)
Gene ID: Rep_460_c_1_175
Type: pfam
Location: 247071 - 247649 (-)
Type: pfam
Location: 247071 - 247649 (-)
Gene ID: Rep_460_c_1_176
Type: pfam
Location: 247858 - 248151 (+)
Type: pfam
Location: 247858 - 248151 (+)
Gene ID: Rep_460_c_1_177
Type: CAZyme
Location: 248177 - 249262 (-)
Type: CAZyme
Location: 248177 - 249262 (-)
Gene ID: Rep_460_c_1_178
Type: CAZyme
Location: 249304 - 251325 (-)
Type: CAZyme
Location: 249304 - 251325 (-)
Gene ID: Rep_460_c_1_179
Type: CAZyme
Location: 251375 - 253996 (-)
Type: CAZyme
Location: 251375 - 253996 (-)
Gene ID: Rep_460_c_1_180
Type: CAZyme
Location: 254012 - 255373 (-)
Type: CAZyme
Location: 254012 - 255373 (-)
Gene ID: Rep_460_c_1_181
Type: CAZyme
Location: 255392 - 257413 (-)
Type: CAZyme
Location: 255392 - 257413 (-)
Gene ID: Rep_460_c_1_182
Type: CAZyme
Location: 257564 - 259165 (-)
Type: CAZyme
Location: 257564 - 259165 (-)
Gene ID: Rep_460_c_1_183
Type: CAZyme
Location: 259219 - 260604 (-)
Type: CAZyme
Location: 259219 - 260604 (-)
Gene ID: Rep_460_c_1_184
Type: CAZyme
Location: 260643 - 263057 (-)
Type: CAZyme
Location: 260643 - 263057 (-)
Gene ID: Rep_460_c_1_185
Type: CAZyme
Location: 263219 - 265777 (-)
Type: CAZyme
Location: 263219 - 265777 (-)
Gene ID: Rep_460_c_1_186
Type: pfam
Location: 265795 - 266310 (-)
Type: pfam
Location: 265795 - 266310 (-)
Gene ID: Rep_460_c_1_187
Type: CAZyme
Location: 266316 - 268208 (-)
Type: CAZyme
Location: 266316 - 268208 (-)
Gene ID: Rep_460_c_1_188
Type: CAZyme
Location: 268542 - 270959 (-)
Type: CAZyme
Location: 268542 - 270959 (-)
Gene ID: Rep_460_c_1_189
Type: CAZyme
Location: 271216 - 273135 (+)
Type: CAZyme
Location: 271216 - 273135 (+)
Gene ID: Rep_460_c_1_190
Type: CAZyme
Location: 273330 - 275414 (+)
Type: CAZyme
Location: 273330 - 275414 (+)
Gene ID: Rep_460_c_1_191
Type: CAZyme
Location: 275555 - 277927 (+)
Type: CAZyme
Location: 275555 - 277927 (+)
Gene ID: Rep_460_c_1_192
Type: CAZyme
Location: 277936 - 279843 (-)
Type: CAZyme
Location: 277936 - 279843 (-)
Gene ID: Rep_460_c_1_193
Type: CAZyme
Location: 279861 - 282968 (-)
Type: CAZyme
Location: 279861 - 282968 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_460_c_1_177 | vegan > omnivore | 2.15591 | 0.00582 |
| Rep_460_c_1_177 | vegetarian > omnivore | 2.00397 | 0.00207 |
| Rep_460_c_1_178 | vegan > omnivore | 3.14960 | 0.00582 |
| Rep_460_c_1_178 | vegetarian > omnivore | 3.00005 | 0.00207 |
| Rep_460_c_1_179 | vegan > omnivore | 2.31000 | 0.00582 |
| Rep_460_c_1_179 | vegetarian > omnivore | 2.12584 | 0.00207 |
| Rep_460_c_1_180 | vegan > omnivore | 2.02295 | 0.00582 |
| Rep_460_c_1_180 | vegetarian > omnivore | 1.80091 | 0.00207 |
| Rep_460_c_1_181 | vegan > omnivore | 1.25859 | 0.00582 |
| Rep_460_c_1_181 | vegetarian > omnivore | 1.32291 | 0.00207 |
| Rep_460_c_1_182 | vegetarian > omnivore | 1.60069 | 0.00207 |
| Rep_460_c_1_182 | vegan > omnivore | 1.12057 | 0.00582 |
| Rep_460_c_1_184 | vegetarian > omnivore | 1.22106 | 0.00207 |
| Rep_460_c_1_184 | vegan > omnivore | 1.38993 | 0.00582 |
| Rep_460_c_1_187 | vegetarian > omnivore | 1.97845 | 0.00207 |
| Rep_460_c_1_187 | vegan > omnivore | 2.24201 | 0.00582 |
| Rep_460_c_1_188 | vegan > omnivore | 2.07957 | 0.00582 |
| Rep_460_c_1_188 | vegetarian > omnivore | 1.11294 | 0.00207 |
| Rep_460_c_1_189 | vegan > omnivore | 1.55406 | 0.00582 |
| Rep_460_c_1_189 | vegetarian > omnivore | 2.22667 | 0.00207 |
| Rep_460_c_1_190 | vegetarian > omnivore | 2.73423 | 0.00207 |
| Rep_460_c_1_190 | vegan > omnivore | 2.67563 | 0.00582 |
| Rep_460_c_1_191 | vegetarian > omnivore | 1.98349 | 0.00207 |
| Rep_460_c_1_191 | vegan > omnivore | 1.63894 | 0.00582 |
| Rep_460_c_1_192 | vegetarian > omnivore | 2.19029 | 0.00207 |
| Rep_460_c_1_192 | vegan > omnivore | 2.38727 | 0.00582 |