Cluster: Rep_460_CGC13
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate: arabinogalactan
- Genome ID: Rep_460
- CGC Family ID: CGCFAM_00928
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_460_c_1 | Rep_460_c_1_41 | 57775 | 60708 | + | 1.B.14.6.1 |
| TC | Rep_460_c_1 | Rep_460_c_1_42 | 60737 | 62275 | + | 8.A.46.1.5 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_43 | 62301 | 63530 | + | GH99 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_44 | 63590 | 65611 | + | GH97 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_45 | 65822 | 69409 | - | CBM67 | GH78 |
| NULL(UNKNOWN) | Rep_460_c_1 | Rep_460_c_1_46 | 69846 | 70010 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_47 | 70216 | 72735 | - | GH51_2 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_48 | 72920 | 74266 | - | CBM32 |
| pfam | Rep_460_c_1 | Rep_460_c_1_49 | 74291 | 76306 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_460_c_1 | Rep_460_c_1_50 | 76331 | 79495 | - | 1.B.14.6.1 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_51 | 79666 | 82098 | - | GH2 |
| CAZyme | Rep_460_c_1 | Rep_460_c_1_52 | 82246 | 85050 | - | CBM13 |
| TF | Rep_460_c_1 | Rep_460_c_1_53 | 85210 | 89139 | - | HTH_AraC |
| TC | Rep_460_c_1 | Rep_460_c_1_54 | 89197 | 90315 | - | 3.A.11.1.3 |
Gene ID: Rep_460_c_1_41
Type: TC
Location: 57775 - 60708 (+)
Type: TC
Location: 57775 - 60708 (+)
Gene ID: Rep_460_c_1_42
Type: TC
Location: 60737 - 62275 (+)
Type: TC
Location: 60737 - 62275 (+)
Gene ID: Rep_460_c_1_43
Type: CAZyme
Location: 62301 - 63530 (+)
Type: CAZyme
Location: 62301 - 63530 (+)
Gene ID: Rep_460_c_1_44
Type: CAZyme
Location: 63590 - 65611 (+)
Type: CAZyme
Location: 63590 - 65611 (+)
Gene ID: Rep_460_c_1_45
Type: CAZyme
Location: 65822 - 69409 (-)
Type: CAZyme
Location: 65822 - 69409 (-)
Gene ID: Rep_460_c_1_46
Type:
Location: 69846 - 70010 (+)
Type:
Location: 69846 - 70010 (+)
Gene ID: Rep_460_c_1_47
Type: CAZyme
Location: 70216 - 72735 (-)
Type: CAZyme
Location: 70216 - 72735 (-)
Gene ID: Rep_460_c_1_48
Type: CAZyme
Location: 72920 - 74266 (-)
Type: CAZyme
Location: 72920 - 74266 (-)
Gene ID: Rep_460_c_1_49
Type: pfam
Location: 74291 - 76306 (-)
Type: pfam
Location: 74291 - 76306 (-)
Gene ID: Rep_460_c_1_50
Type: TC
Location: 76331 - 79495 (-)
Type: TC
Location: 76331 - 79495 (-)
Gene ID: Rep_460_c_1_51
Type: CAZyme
Location: 79666 - 82098 (-)
Type: CAZyme
Location: 79666 - 82098 (-)
Gene ID: Rep_460_c_1_52
Type: CAZyme
Location: 82246 - 85050 (-)
Type: CAZyme
Location: 82246 - 85050 (-)
Gene ID: Rep_460_c_1_53
Type: TF
Location: 85210 - 89139 (-)
Type: TF
Location: 85210 - 89139 (-)
Gene ID: Rep_460_c_1_54
Type: TC
Location: 89197 - 90315 (-)
Type: TC
Location: 89197 - 90315 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides stercorirosoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.