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Cluster: Rep_460_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_460_c_0 Rep_460_c_0_161 237909 238733 + GT5
pfam Rep_460_c_0 Rep_460_c_0_162 238754 240292 + DUF4270
CAZyme Rep_460_c_0 Rep_460_c_0_163 240385 241785 - GH57
CAZyme Rep_460_c_0 Rep_460_c_0_164 241804 243063 - GT4
CAZyme Rep_460_c_0 Rep_460_c_0_165 243090 245030 - GH133
TC Rep_460_c_0 Rep_460_c_0_166 245224 245934 + 9.B.104.3.2
TC Rep_460_c_0 Rep_460_c_0_167 245929 246555 - 2.A.124.1.4
Gene ID: Rep_460_c_0_161
Type: CAZyme
Location: 237909 - 238733 (+)
Gene ID: Rep_460_c_0_162
Type: pfam
Location: 238754 - 240292 (+)
Gene ID: Rep_460_c_0_163
Type: CAZyme
Location: 240385 - 241785 (-)
Gene ID: Rep_460_c_0_164
Type: CAZyme
Location: 241804 - 243063 (-)
Gene ID: Rep_460_c_0_165
Type: CAZyme
Location: 243090 - 245030 (-)
Gene ID: Rep_460_c_0_166
Type: TC
Location: 245224 - 245934 (+)
Gene ID: Rep_460_c_0_167
Type: TC
Location: 245929 - 246555 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_0_166 vegan > omnivore 1.57426 0.00582
Rep_460_c_0_166 vegetarian > omnivore 1.25178 0.00207

🧭 Explore Read Mapping of CGC

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