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Cluster: Rep_460_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_460_c_0 Rep_460_c_0_12 15649 18060 + 1.B.14.6.7
STP Rep_460_c_0 Rep_460_c_0_13 18205 18615 + Glyoxalase
TC Rep_460_c_0 Rep_460_c_0_14 18660 20213 + 3.B.1.1.2
pfam Rep_460_c_0 Rep_460_c_0_15 20306 21238 + LTD | OAD_gamma
TC Rep_460_c_0 Rep_460_c_0_16 21261 21686 + 3.B.1.1.2
TC Rep_460_c_0 Rep_460_c_0_17 21688 22848 + 3.B.1.1.2
pfam Rep_460_c_0 Rep_460_c_0_18 23036 24370 + TPR_16
CAZyme Rep_460_c_0 Rep_460_c_0_19 24520 26370 + GH13_46
Gene ID: Rep_460_c_0_12
Type: TC
Location: 15649 - 18060 (+)
Gene ID: Rep_460_c_0_13
Type: STP
Location: 18205 - 18615 (+)
Gene ID: Rep_460_c_0_14
Type: TC
Location: 18660 - 20213 (+)
Gene ID: Rep_460_c_0_15
Type: pfam
Location: 20306 - 21238 (+)
Gene ID: Rep_460_c_0_16
Type: TC
Location: 21261 - 21686 (+)
Gene ID: Rep_460_c_0_17
Type: TC
Location: 21688 - 22848 (+)
Gene ID: Rep_460_c_0_18
Type: pfam
Location: 23036 - 24370 (+)
Gene ID: Rep_460_c_0_19
Type: CAZyme
Location: 24520 - 26370 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_460_c_0_12 vegan > omnivore 1.68897 0.00582
Rep_460_c_0_12 vegetarian > omnivore 2.31671 0.00207

🧭 Explore Read Mapping of CGC

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