Cluster: Rep_457_CGC97
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_03944
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_457_c_0 | Rep_457_c_0_4397 | 5901781 | 5903325 | - | 8.A.46.1.4 |
| TC | Rep_457_c_0 | Rep_457_c_0_4398 | 5903340 | 5906498 | - | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4399 | 5906717 | 5907949 | - | Phage_integrase | Phage_int_SAM_5 | Arm-DNA-bind_5 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4400 | 5908145 | 5910766 | + | GH2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4401 | 5910824 | 5912227 | - | PL6_1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4402 | 5912367 | 5913374 | - | URO-D |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4403 | 5913481 | 5915538 | - | GH36 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4404 | 5915705 | 5916184 | - | NlpE |
| TC | Rep_457_c_0 | Rep_457_c_0_4405 | 5916225 | 5917544 | - | 9.A.40.2.2 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4406 | 5917616 | 5918434 | + | CE1 |
Gene ID: Rep_457_c_0_4397
Type: TC
Location: 5901781 - 5903325 (-)
Type: TC
Location: 5901781 - 5903325 (-)
Gene ID: Rep_457_c_0_4398
Type: TC
Location: 5903340 - 5906498 (-)
Type: TC
Location: 5903340 - 5906498 (-)
Gene ID: Rep_457_c_0_4399
Type: pfam
Location: 5906717 - 5907949 (-)
Type: pfam
Location: 5906717 - 5907949 (-)
Gene ID: Rep_457_c_0_4400
Type: CAZyme
Location: 5908145 - 5910766 (+)
Type: CAZyme
Location: 5908145 - 5910766 (+)
Gene ID: Rep_457_c_0_4401
Type: CAZyme
Location: 5910824 - 5912227 (-)
Type: CAZyme
Location: 5910824 - 5912227 (-)
Gene ID: Rep_457_c_0_4402
Type: pfam
Location: 5912367 - 5913374 (-)
Type: pfam
Location: 5912367 - 5913374 (-)
Gene ID: Rep_457_c_0_4403
Type: CAZyme
Location: 5913481 - 5915538 (-)
Type: CAZyme
Location: 5913481 - 5915538 (-)
Gene ID: Rep_457_c_0_4404
Type: pfam
Location: 5915705 - 5916184 (-)
Type: pfam
Location: 5915705 - 5916184 (-)
Gene ID: Rep_457_c_0_4405
Type: TC
Location: 5916225 - 5917544 (-)
Type: TC
Location: 5916225 - 5917544 (-)
Gene ID: Rep_457_c_0_4406
Type: CAZyme
Location: 5917616 - 5918434 (+)
Type: CAZyme
Location: 5917616 - 5918434 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_4399 | vegan > omnivore | 2.29288 | 0.01606 |
| Rep_457_c_0_4399 | vegetarian > omnivore | 2.63968 | 0.00110 |
| Rep_457_c_0_4400 | vegan > omnivore | 1.55609 | 0.01606 |
| Rep_457_c_0_4400 | vegetarian > omnivore | 1.99380 | 0.00110 |
| Rep_457_c_0_4401 | vegan > omnivore | 3.49210 | 0.01606 |
| Rep_457_c_0_4401 | vegetarian > omnivore | 1.50690 | 0.00110 |
| Rep_457_c_0_4402 | vegan > omnivore | 3.31780 | 0.01606 |