Cluster: Rep_457_CGC94
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate: pectin/galactan
- Genome ID: Rep_457
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4261 | 5709824 | 5712391 | + | GH147 |
| TC | Rep_457_c_0 | Rep_457_c_0_4262 | 5712470 | 5715439 | + | 1.B.14.6.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4263 | 5715464 | 5717035 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4264 | 5717051 | 5718775 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4265 | 5718788 | 5719852 | + | GH53 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4266 | 5719862 | 5722336 | + | GH2 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4267 | 5722379 | 5723929 | - | PDDEXK_9 | AAA-ATPase_like |
| TC | Rep_457_c_0 | Rep_457_c_0_4268 | 5725550 | 5728582 | + | 1.B.14.6.1 |
| TC | Rep_457_c_0 | Rep_457_c_0_4269 | 5728603 | 5730279 | + | 8.A.46.1.1 |
| pfam | Rep_457_c_0 | Rep_457_c_0_4270 | 5730321 | 5731487 | + | SusE | SusF_SusE |
| pfam | Rep_457_c_0 | Rep_457_c_0_4271 | 5731523 | 5732995 | + | SusF_SusE | SusF_N |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4272 | 5733092 | 5734198 | + | GH53 |
| CAZyme | Rep_457_c_0 | Rep_457_c_0_4273 | 5734292 | 5736178 | + | GH13_46 |
Gene ID: Rep_457_c_0_4261
Type: CAZyme
Location: 5709824 - 5712391 (+)
Type: CAZyme
Location: 5709824 - 5712391 (+)
Gene ID: Rep_457_c_0_4262
Type: TC
Location: 5712470 - 5715439 (+)
Type: TC
Location: 5712470 - 5715439 (+)
Gene ID: Rep_457_c_0_4263
Type: pfam
Location: 5715464 - 5717035 (+)
Type: pfam
Location: 5715464 - 5717035 (+)
Gene ID: Rep_457_c_0_4264
Type: pfam
Location: 5717051 - 5718775 (+)
Type: pfam
Location: 5717051 - 5718775 (+)
Gene ID: Rep_457_c_0_4265
Type: CAZyme
Location: 5718788 - 5719852 (+)
Type: CAZyme
Location: 5718788 - 5719852 (+)
Gene ID: Rep_457_c_0_4266
Type: CAZyme
Location: 5719862 - 5722336 (+)
Type: CAZyme
Location: 5719862 - 5722336 (+)
Gene ID: Rep_457_c_0_4267
Type: pfam
Location: 5722379 - 5723929 (-)
Type: pfam
Location: 5722379 - 5723929 (-)
Gene ID: Rep_457_c_0_4268
Type: TC
Location: 5725550 - 5728582 (+)
Type: TC
Location: 5725550 - 5728582 (+)
Gene ID: Rep_457_c_0_4269
Type: TC
Location: 5728603 - 5730279 (+)
Type: TC
Location: 5728603 - 5730279 (+)
Gene ID: Rep_457_c_0_4270
Type: pfam
Location: 5730321 - 5731487 (+)
Type: pfam
Location: 5730321 - 5731487 (+)
Gene ID: Rep_457_c_0_4271
Type: pfam
Location: 5731523 - 5732995 (+)
Type: pfam
Location: 5731523 - 5732995 (+)
Gene ID: Rep_457_c_0_4272
Type: CAZyme
Location: 5733092 - 5734198 (+)
Type: CAZyme
Location: 5733092 - 5734198 (+)
Gene ID: Rep_457_c_0_4273
Type: CAZyme
Location: 5734292 - 5736178 (+)
Type: CAZyme
Location: 5734292 - 5736178 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides cellulosilyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_457_c_0_4261 | vegan > omnivore | 1.48341 | 0.01606 |
| Rep_457_c_0_4261 | vegetarian > omnivore | 1.94927 | 0.00110 |
| Rep_457_c_0_4273 | vegetarian > omnivore | 1.19692 | 0.00110 |